High-throughput three-dimensional visualization of root system architecture of rice using X-ray computed tomography

Root Cortex Provides a Venue for Gas-Space Formation and Is Essential for Plant Adaptation to Waterlogging

(2019) Takaki Yamauchi et al.   Frontiers in Plant Science

Shovelomics for phenotyping root architectural traits of rapeseed/canola (Brassica napus L.) and genome-wide association mapping

(2019) Muhammad Arifuzzaman et al.   MOLECULAR GENETICS AND GENOMICS

A shape-based method for automatic and rapid segmentation of roots in soil from X-ray computed tomography images: Rootine

(2019) Wei Gao et al.   PLANT AND SOIL

Soil carbon dioxide venting through rice roots

(2019) Guy J.D. Kirk et al.   PLANT CELL AND ENVIRONMENT

Fine control of aerenchyma and lateral root development through AUX/IAA- and ARF-dependent auxin signaling

(2019) Takaki Yamauchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of soil puddling intensity on the root system architecture of rice (Oryza sativa L.) seedlings

(2019) Huan Fang et al.   SOIL & TILLAGE RESEARCH

Drought-induced changes in root biomass largely result from altered root morphological traits: evidence from a synthesis of global field trials

(2018) Guiyao Zhou et al.   PLANT CELL AND ENVIRONMENT

How much is too much?—Influence of X-ray dose on root growth of faba bean (Vicia faba) and barley (Hordeum vulgare)

(2018) Sebastian R. G. A. Blaser et al.   PLoS One

Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate

(2018) Jitender Giri et al.   Nature Communications

Rice actin binding protein RMD controls crown root angle in response to external phosphate

(2018) Guoqiang Huang et al.   Nature Communications

Uncovering the hidden half of plants using new advances in root phenotyping

(2018) Jonathan A Atkinson et al.   CURRENT OPINION IN BIOTECHNOLOGY

LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice

(2017) Lingling Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

The emergent rhizosphere: imaging the development of the porous architecture at the root-soil interface

(2017) J. R. Helliwell et al.   Scientific Reports

How can we harness quantitative genetic variation in crop root systems for agricultural improvement?

(2016) Christopher N. Topp et al.   Journal of Integrative Plant Biology

Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants

(2016) Miguel A. Piñeros et al.   Journal of Integrative Plant Biology

Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana

(2016) Deepa Khare et al.   NEW PHYTOLOGIST

X-Ray Computed Tomography Reveals the Response of Root System Architecture to Soil Texture

(2016) Eric D. Rogers et al.   PLANT PHYSIOLOGY

Imaging the interaction of roots and phosphate fertiliser granules using 4D X-ray tomography

(2015) Sharif Ahmed et al.   PLANT AND SOIL

Extracting multiple interacting root systems using X-ray microcomputed tomography

(2015) Stefan Mairhofer et al.   PLANT JOURNAL

Rapid phenotyping of crop root systems in undisturbed field soils using X-ray computed tomography

(2015) Johannes Pfeifer et al.   Plant Methods

Root Architecture Responses: In Search of Phosphate

(2014) B. Peret et al.   PLANT PHYSIOLOGY

scikit-image: image processing in Python

(2014) Stéfan van der Walt et al.   PeerJ

Ceramic Aggregate Sorption and Desorption Chemistry: Implications for Use as a Component of Soilless Media

(2013) Curtis Adams et al.   JOURNAL OF PLANT NUTRITION

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions

(2013) Yusaku Uga et al.   NATURE GENETICS

Quantifying the effect of soil moisture content on segmenting root system architecture in X-ray computed tomography images

(2013) Susan Zappala et al.   PLANT AND SOIL

Plasticity of the Arabidopsis Root System under Nutrient Deficiencies

(2013) B. D. Gruber et al.   PLANT PHYSIOLOGY

Effects of X-Ray Dose On Rhizosphere Studies Using X-Ray Computed Tomography

(2013) Susan Zappala et al.   PLoS One

Non-destructive quantification of cereal roots in soil using high-resolution X-ray tomography

(2012) R. J. Flavel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root attributes affecting water uptake of rice (Oryza sativa) under drought

(2012) Amelia Henry et al.   JOURNAL OF EXPERIMENTAL BOTANY

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

RooTrak: Automated Recovery of Three-Dimensional Plant Root Architecture in Soil from X-Ray Microcomputed Tomography Images Using Visual Tracking

(2011) S. Mairhofer et al.   PLANT PHYSIOLOGY

Shovelomics: high throughput phenotyping of maize (Zea mays L.) root architecture in the field

(2010) Samuel Trachsel et al.   PLANT AND SOIL

Ammonium Triggers Lateral Root Branching in Arabidopsis in an AMMONIUM TRANSPORTER1;3-Dependent Manner

(2010) J. E. Lima et al.   PLANT CELL

Variation in root morphology and anatomy among accessions of cultivated rice (Oryza sativa L.) with different genetic backgrounds

(2009) Yusaku Uga et al.   BREEDING SCIENCE