A shape-based method for automatic and rapid segmentation of roots in soil from X-ray computed tomography images: Rootine

How much is too much?—Influence of X-ray dose on root growth of faba bean (Vicia faba) and barley (Hordeum vulgare)

(2018) Sebastian R. G. A. Blaser et al.   PLoS One

Existing and Potential Statistical and Computational Approaches for the Analysis of 3D CT Images of Plant Roots

(2018) Zheng Xu et al.   Agronomy-Basel

The Application of Contrast Media for In Vivo Feature Enhancement in X-Ray Computed Tomography of Soil-Grown Plant Roots

(2017) Samuel D. Keyes et al.   MICROSCOPY AND MICROANALYSIS

High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation

(2017) Nicolai Koebernick et al.   NEW PHYTOLOGIST

An image processing and analysis tool for identifying and analysing complex plant root systems in 3D soil using non-destructive analysis: Root1

(2017) Richard J. Flavel et al.   PLoS One

Challenges in imaging and predictive modeling of rhizosphere processes

(2016) T. Roose et al.   PLANT AND SOIL

Root age distribution: how does it matter in plant processes? A focus on water uptake

(2016) Doris Vetterlein et al.   PLANT AND SOIL

RootGraph: a graphic optimization tool for automated image analysis of plant roots

(2015) Jinhai Cai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Rapid phenotyping of crop root systems in undisturbed field soils using X-ray computed tomography

(2015) Johannes Pfeifer et al.   Plant Methods

Direct comparison of MRI and X-ray CT technologies for 3D imaging of root systems in soil: potential and challenges for root trait quantification

(2015) Ralf Metzner et al.   Plant Methods

Quantifying the response of wheat (Triticum aestivum L) root system architecture to phosphorus in an Oxisol

(2014) Richard J. Flavel et al.   PLANT AND SOIL

In Situ Visualization and Quantification of Three-Dimensional Root System Architecture and Growth Using X-Ray Computed Tomography

(2014) Nicolai Koebernick et al.   VADOSE ZONE JOURNAL

Image processing of multiphase images obtained via X-ray microtomography: A review

(2014) Steffen Schlüter et al.   WATER RESOURCES RESEARCH

TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization

(2013) Jean Ollion et al.   BIOINFORMATICS

Applications of X-ray computed tomography for examining biophysical interactions and structural development in soil systems: a review

(2013) J. R. Helliwell et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Quantifying the effect of soil moisture content on segmenting root system architecture in X-ray computed tomography images

(2013) Susan Zappala et al.   PLANT AND SOIL

Recovering complete plant root system architectures from soil via X-ray μ-Computed Tomography

(2013) Stefan Mairhofer et al.   Plant Methods

Effects of X-Ray Dose On Rhizosphere Studies Using X-Ray Computed Tomography

(2013) Susan Zappala et al.   PLoS One

X-ray Computed Microtomography for the Study of the Soil–Root Relationship in Grassland Soils

(2013) Katrin Kuka et al.   VADOSE ZONE JOURNAL

In Situ Root System Architecture Extraction from Magnetic Resonance Imaging for Water Uptake Modeling

(2013) Laura Stingaciu et al.   VADOSE ZONE JOURNAL

Quantifying the impact of soil compaction on root system architecture in tomato (Solanum lycopersicum) by X-ray micro-computed tomography

(2012) Saoirse R. Tracy et al.   ANNALS OF BOTANY

Non-destructive quantification of cereal roots in soil using high-resolution X-ray tomography

(2012) R. J. Flavel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Efficient and robust nonlocal means denoising of MR data based on salient features matching

(2011) Antonio Tristán-Vega et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Quantifying the effect of soil compaction on three varieties of wheat (Triticum aestivum L.) using X-ray Micro Computed Tomography (CT)

(2011) Saoirse R. Tracy et al.   PLANT AND SOIL

Developing X-ray Computed Tomography to non-invasively image 3-D root systems architecture in soil

(2011) S. J. Mooney et al.   PLANT AND SOIL

RooTrak: Automated Recovery of Three-Dimensional Plant Root Architecture in Soil from X-Ray Microcomputed Tomography Images Using Visual Tracking

(2011) S. Mairhofer et al.   PLANT PHYSIOLOGY

BoneJ: Free and extensible bone image analysis in ImageJ

(2010) Michael Doube et al.   BONE

The X-factor: visualizing undisturbed root architecture in soils using X-ray computed tomography

(2010) S. R. Tracy et al.   JOURNAL OF EXPERIMENTAL BOTANY