Ecological and evolutionary mechanisms underlying patterns of phylosymbiosis in host-associated microbial communities

Conservation biology needs a microbial renaissance: a call for the consideration of host-associated microbiota in wildlife management practices

(2019) Brian K. Trevelline et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes

(2019) Angela C. Poole et al.   Cell Host & Microbe

High proportions of bacteria are culturable across major biomes

(2019) Adam C. Martiny   ISME Journal

Evaluation of the impact of in ovo administered bacteria on microbiome of chicks through 10 days of age

(2019) K M Wilson et al.   POULTRY SCIENCE

Phylosymbiosis Impacts Adaptive Traits in Nasonia Wasps

(2019) Edward J. van Opstal et al.   mBio

Neutrality in the Metaorganism

(2019) Michael Sieber et al.   PLOS BIOLOGY

Maternal Vertical Transmission Affecting Early-life Microbiota Development

(2019) Shaopu Wang et al.   TRENDS IN MICROBIOLOGY

In ovomicrobial communities: a potential mechanism for the initial acquisition of gut microbiota among oviparous birds and lizards

(2018) Brian K. Trevelline et al.   Biology Letters

Bacterial Adaptation to the Host's Diet Is a Key Evolutionary Force Shaping Drosophila-Lactobacillus Symbiosis

(2018) Maria Elena Martino et al.   Cell Host & Microbe

Role of priority effects in the early-life assembly of the gut microbiota

(2018) Daniel Sprockett et al.   Nature Reviews Gastroenterology & Hepatology

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Allometry and Ecology of the Bilaterian Gut Microbiome

(2018) Scott Sherrill-Mix et al.   mBio

Genetic and Molecular Mechanisms Underlying Symbiotic Specificity in Legume-Rhizobium Interactions

(2018) Qi Wang et al.   Frontiers in Plant Science

Using Cultivated Microbial Communities To Dissect Microbiome Assembly: Challenges, Limitations, and the Path Ahead

(2018) Benjamin E. Wolfe   mSystems

Interaction between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer

(2018) Ce Yuan et al.   mSystems

A Microbial Perspective on the Grand Challenges in Comparative Animal Physiology

(2018) Kevin D. Kohl   mSystems

Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly

(2018) Inés Martínez et al.   eLife

Altitudinal variation of the gut microbiota in wild house mice

(2018) Taichi A. Suzuki et al.   MOLECULAR ECOLOGY

Transmission modes of the mammalian gut microbiota

(2018) Andrew H. Moeller et al.   SCIENCE

Experimental bacterial adaptation to the zebrafish gut reveals a primary role for immigration

(2018) Catherine D. Robinson et al.   PLOS BIOLOGY

Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life?

(2018) Florent Mazel et al.   mSystems

Dispersal timing determines the importance of priority effects in bacterial communities

(2017) Pavel Svoboda et al.   ISME Journal

The role of adaptive immunity as an ecological filter on the gut microbiota in zebrafish

(2017) Keaton Stagaman et al.   ISME Journal

Gut microbial communities of American pikas (Ochotona princeps ): Evidence for phylosymbiosis and adaptations to novel diets

(2017) Kevin D. Kohl et al.   JOURNAL OF ANIMAL ECOLOGY

Microbial communities exhibit host species distinguishability and phylosymbiosis along the length of the gastrointestinal tract

(2017) Kevin D. Kohl et al.   MOLECULAR ECOLOGY

Dispersal limitation promotes the diversification of the mammalian gut microbiota

(2017) Andrew H. Moeller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interhost dispersal alters microbiome assembly and can overwhelm host innate immunity in an experimental zebrafish model

(2017) Adam R. Burns et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time

(2017) Mathieu Groussin et al.   Nature Communications

Models of microbiome evolution incorporating host and microbial selection

(2017) Qinglong Zeng et al.   Microbiome

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

(2017) Francesco Asnicar et al.   mSystems

The microbiome beyond the horizon of ecological and evolutionary theory

(2017) Britt Koskella et al.   Nature Ecology & Evolution

Community structure follows simple assembly rules in microbial microcosms

(2017) Jonathan Friedman et al.   Nature Ecology & Evolution

The Host Shapes the Gut Microbiota via Fecal MicroRNA

(2016) Shirong Liu et al.   Cell Host & Microbe

Cross-species comparisons of host genetic associations with the microbiome

(2016) Julia K. Goodrich et al.   SCIENCE

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling

(2016) Jennifer T. Lau et al.   Genome Medicine

Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History

(2016) Andrew W. Brooks et al.   PLOS BIOLOGY

Experimental Evolution on a Wild Mammal Species Results in Modifications of Gut Microbial Communities

(2016) Kevin D. Kohl et al.   Frontiers in Microbiology

Experimental Evolution as an Underutilized Tool for Studying Beneficial Animal–Microbe Interactions

(2016) Kim L. Hoang et al.   Frontiers in Microbiology

Host-Specific Functional Significance of Caenorhabditis Gut Commensals

(2016) Maureen Berg et al.   Frontiers in Microbiology

An optimized approach to germ-free rearing in the jewel waspNasonia

(2016) J. Dylan Shropshire et al.   PeerJ

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

(2016) Ilias Lagkouvardos et al.   Nature Microbiology

Deterministic Assembly of Complex Bacterial Communities in Guts of Germ-Free Cockroaches

(2015) Aram Mikaelyan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Innate immune responses to gut microbiota differ between oceanic and freshwater threespine stickleback populations

(2015) Kathryn Milligan-Myhre et al.   Disease Models & Mechanisms

Inoculation of tannin-degrading bacteria into novel hosts increases performance on tannin-rich diets

(2015) Kevin D. Kohl et al.   ENVIRONMENTAL MICROBIOLOGY

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Analysis of intestinal microbiota in hybrid house mice reveals evolutionary divergence in a vertebrate hologenome

(2015) Jun Wang et al.   Nature Communications

Social networks predict gut microbiome composition in wild baboons

(2015) Jenny Tung et al.   eLife

Bacterial seed endophytes: genera, vertical transmission and interaction with plants

(2014) Sascha Truyens et al.   Environmental Microbiology Reports

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

Divining the Essence of Symbiosis: Insights from the Squid-Vibrio Model

(2014) Margaret McFall-Ngai   PLOS BIOLOGY

Molecular basis of host specificity in human pathogenic bacteria

(2014) Xiaolei Pan et al.   Emerging Microbes & Infections

Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)

(2013) Andrew H Loudon et al.   ISME Journal

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

(2013) Katherine R Amato et al.   ISME Journal

Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model

(2013) Jonathan McCafferty et al.   ISME Journal

Linking social and pathogen transmission networks using microbial genetics in giraffe (Giraffa camelopardalis)

(2013) Kimberly L. VanderWaal et al.   JOURNAL OF ANIMAL ECOLOGY

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes

(2013) Jon G. Sanders et al.   MOLECULAR ECOLOGY

Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution

(2013) D. M. de Vienne et al.   NEW PHYTOLOGIST

Distinct antimicrobial peptide expression determines host species-specific bacterial associations

(2013) S. Franzenburg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota

(2013) P. C. Kashyap et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia

(2013) R. M. Brucker et al.   SCIENCE

Frequent Replenishment Sustains the Beneficial Microbiome of Drosophila melanogaster

(2013) J. E. Blum et al.   mBio

Mom Knows Best: The Universality of Maternal Microbial Transmission

(2013) Lisa J. Funkhouser et al.   PLOS BIOLOGY

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

(2011) A. L. Goodman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intestinal alkaline phosphatase preserves the normal homeostasis of gut microbiota

(2010) M. S. Malo et al.   GUT

Genomics and Evolution of Heritable Bacterial Symbionts

(2008) Nancy A. Moran et al.   Annual Review of Genetics

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

Symbiont acquisition alters behaviour of stinkbug nymphs

(2007) T. Hosokawa et al.   Biology Letters