Structure of SWI/SNF chromatin remodeller RSC bound to a nucleosome

Dynamics of Chromatin and Transcription during Transient Depletion of the RSC Chromatin Remodeling Complex

(2019) Avital Klein-Brill et al.   Cell Reports

Structures of the ISWI–nucleosome complex reveal a conserved mechanism of chromatin remodeling

(2019) Lijuan Yan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Mechanism of DNA translocation underlying chromatin remodelling by Snf2

(2019) Meijing Li et al.   NATURE

Mechanism of Cross-talk between H2B Ubiquitination and H3 Methylation by Dot1L

(2019) Evan J. Worden et al.   CELL

Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2A.Z-containing nucleosomes

(2019) Aylin Cakiroglu et al.   GENOME RESEARCH

The PSIPRED Protein Analysis Workbench: 20 years on

(2019) Daniel W A Buchan et al.   NUCLEIC ACIDS RESEARCH

Namdinator – automatic molecular dynamics flexible fitting of structural models into cryo-EM and crystallography experimental maps

(2019) Rune Thomas Kidmose et al.   IUCrJ

Real-time cryo-electron microscopy data preprocessing with Warp

(2019) Dimitry Tegunov et al.   NATURE METHODS

Structure of the RSC complex bound to the nucleosome

(2019) Youpi Ye et al.   SCIENCE

Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement

(2019) Avinash B Patel et al.   eLife

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

(2018) Lukas Zimmermann et al.   JOURNAL OF MOLECULAR BIOLOGY

Sequence-Directed Action of RSC Remodeler and General Regulatory Factors Modulates +1 Nucleosome Position to Facilitate Transcription

(2018) Slawomir Kubik et al.   MOLECULAR CELL

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

Structural basis for ATP-dependent chromatin remodelling by the INO80 complex

(2018) Sebastian Eustermann et al.   NATURE

Structure and regulation of the human INO80–nucleosome complex

(2018) Rafael Ayala et al.   NATURE

Domain architecture of BAF250a reveals the ARID and ARM-repeat domains with implication in function and assembly of the BAF remodeling complex

(2018) Sankaran Sandhya et al.   PLoS One

Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome

(2018) Ramasubramanian Sundaramoorthy et al.   eLife

Histone Acetylation Inhibits RSC and Stabilizes the +1 Nucleosome

(2018) Yahli Lorch et al.   MOLECULAR CELL

RSC-Associated Subnucleosomes Define MNase-Sensitive Promoters in Yeast

(2018) Sandipan Brahma et al.   MOLECULAR CELL

Structure and dynamics of the yeast SWR1-nucleosome complex

(2018) Oliver Willhoft et al.   SCIENCE

New tools for automated high-resolution cryo-EM structure determination in RELION-3

(2018) Jasenko Zivanov et al.   eLife

Nucleosome–Chd1 structure and implications for chromatin remodelling

(2017) Lucas Farnung et al.   NATURE

Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes

(2017) Cedric R. Clapier et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

(2017) Thomas D. Goddard et al.   PROTEIN SCIENCE

MolProbity: More and better reference data for improved all-atom structure validation

(2017) Christopher J. Williams et al.   PROTEIN SCIENCE

Chromatin-remodeling for transcription

(2017) Yahli Lorch et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Genomic Nucleosome Organization Reconstituted with Pure Proteins

(2016) Nils Krietenstein et al.   CELL

Regulation of DNA Translocation Efficiency within the Chromatin Remodeler RSC/Sth1 Potentiates Nucleosome Sliding and Ejection

(2016) Cedric R. Clapier et al.   MOLECULAR CELL

The SWISS-MODEL Repository—new features and functionality

(2016) Stefan Bienert et al.   NUCLEIC ACIDS RESEARCH

Histone H2B ubiquitylation represses gametogenesis by opposing RSC-dependent chromatin remodeling at the ste11 master regulator locus

(2016) Philippe Materne et al.   eLife

Structures of designed armadillo-repeat proteins show propagation of inter-repeat interface effects

(2016) Christian Reichen et al.   Acta Crystallographica Section D-Structural Biology

xiNET: Cross-link Network Maps With Residue Resolution

(2015) Colin W. Combe et al.   MOLECULAR & CELLULAR PROTEOMICS

Nucleosome Stability Distinguishes Two Different Promoter Types at All Protein-Coding Genes in Yeast

(2015) Slawomir Kubik et al.   MOLECULAR CELL

Structural basis for retroviral integration into nucleosomes

(2015) Daniel P. Maskell et al.   NATURE

xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints

(2015) Maximilian Grimm et al.   NUCLEIC ACIDS RESEARCH

Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions

(2014) Yahli Lorch et al.   GENES & DEVELOPMENT

Asymmetric nucleosomes flank promoters in the budding yeast genome

(2014) Srinivas Ramachandran et al.   GENOME RESEARCH

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

The BAH domain of Rsc2 is a histone H3 binding domain

(2013) Anna L. Chambers et al.   NUCLEIC ACIDS RESEARCH

Structure of an actin-related subcomplex of the SWI/SNF chromatin remodeler

(2013) Heidi L. Schubert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Resolution Comparative Modeling with RosettaCM

(2013) Yifan Song et al.   STRUCTURE

The SnAC Domain of SWI/SNF Is a Histone Anchor Required for Remodeling

(2012) P. Sen et al.   MOLECULAR AND CELLULAR BIOLOGY

A map of nucleosome positions in yeast at base-pair resolution

(2012) Kristin Brogaard et al.   NATURE

Identification of cross-linked peptides from complex samples

(2012) Bing Yang et al.   NATURE METHODS

The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.

(2012) Ethan Cerami et al.   Cancer Discovery

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities

(2010) Y. Liu et al.   BIOINFORMATICS

Structural insights into selective histone H3 recognition by the human Polybromo bromodomain 2

(2010) Zachary Charlop-Powers et al.   CELL RESEARCH

SWI/SNF Has Intrinsic Nucleosome Disassembly Activity that Is Dependent on Adjacent Nucleosomes

(2010) Mekonnen Lemma Dechassa et al.   MOLECULAR CELL

ALINE: a WYSIWYG protein-sequence alignment editor for publication-quality alignments

(2009) Charles Simon Bond et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

3D-DART: a DNA structure modelling server

(2009) M. van Dijk et al.   NUCLEIC ACIDS RESEARCH

Structure prediction for CASP8 with all-atom refinement using Rosetta

(2009) Srivatsan Raman et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters

(2008) Gwenael Badis et al.   MOLECULAR CELL

The HSA domain binds nuclear actin-related proteins to regulate chromatin-remodeling ATPases

(2008) Heather Szerlong et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structure of a RSC–nucleosome complex and insights into chromatin remodeling

(2008) Yuriy Chaban et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY