Three-dimensional nuclear organization in Arabidopsis thaliana

Ribosomal RNA genes shape chromatin domains associating with the nucleolus

(2019) Ariadna Picart-Picolo et al.   Nucleus

Chromosome conformation capture resolved near complete genome assembly of broomcorn millet

(2019) Junpeng Shi et al.   Nature Communications

The chromatin-associated protein PWO1 interacts with plant nuclear lamin-like components to regulate nuclear size

(2019) Pawel Mikulski et al.   PLANT CELL

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

(2019) Yan Hu et al.   NATURE GENETICS

3D genome organization: a role for phase separation and loop extrusion?

(2019) Maike Stam et al.   CURRENT OPINION IN PLANT BIOLOGY

Durum wheat genome highlights past domestication signatures and future improvement targets

(2019) Marco Maccaferri et al.   NATURE GENETICS

Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications

(2019) René Richter et al.   PLoS Genetics

Principles of genome folding into topologically associating domains

(2019) Quentin Szabo et al.   Science Advances

Two contrasting classes of nucleolus-associated domains in mouse fibroblast heterochromatin

(2019) Anastassiia Vertii et al.   GENOME RESEARCH

Ribosome Biogenesis in Plants: from Functional 45S Ribosomal DNA Organization to Ribosome Assembly Factors

(2019) Julio Saez-Vasquez et al.   PLANT CELL

Chromatin interaction maps reveal genetic regulation for quantitative traits in maize

(2019) Yong Peng et al.   Nature Communications

Long-range interactions between proximal and distal regulatory regions in maize

(2019) En Li et al.   Nature Communications

The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis

(2019) Lisong Hu et al.   Nature Communications

Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus

(2018) Sofia A. Quinodoz et al.   CELL

Forces driving the three‐dimensional folding of eukaryotic genomes

(2018) Alvaro Rada‐Iglesias et al.   Molecular Systems Biology

The Rosa genome provides new insights into the domestication of modern roses

(2018) Olivier Raymond et al.   NATURE GENETICS

A chromatin loop represses WUSCHEL expression in Arabidopsis

(2018) Lin Guo et al.   PLANT JOURNAL

Genome-wide Hi-C analysis reveals extensive hierarchical chromatin interactions in rice

(2018) Qianli Dong et al.   PLANT JOURNAL

Entering the Next Dimension: Plant Genomes in 3D

(2018) Mariana Sotelo-Silveira et al.   TRENDS IN PLANT SCIENCE

TADs are 3D structural units of higher-order chromosome organization in Drosophila

(2018) Quentin Szabo et al.   Science Advances

Transcription-driven genome organization: a model for chromosome structure and the regulation of gene expression tested through simulations

(2018) Peter R Cook et al.   NUCLEIC ACIDS RESEARCH

Organizational principles of 3D genome architecture

(2018) M. Jordan Rowley et al.   NATURE REVIEWS GENETICS

Desiccation tolerance evolved through gene duplication and network rewiring in Lindernia

(2018) Robert VanBuren et al.   PLANT CELL

Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery

(2017) Xiuli Bi et al.   GENOME RESEARCH

The LINC complex contributes to heterochromatin organisation and transcriptional gene silencing in plants

(2017) Axel Poulet et al.   JOURNAL OF CELL SCIENCE

Evolutionarily Conserved Principles Predict 3D Chromatin Organization

(2017) M. Jordan Rowley et al.   MOLECULAR CELL

3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments

(2017) Pengfei Dong et al.   Molecular Plant

Phase separation drives heterochromatin domain formation

(2017) Amy R. Strom et al.   NATURE

Two independent modes of chromatin organization revealed by cohesin removal

(2017) Wibke Schwarzer et al.   NATURE

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Nucleolar Proteome Analysis and Proteasomal Activity Assays Reveal a Link between Nucleolus and 26S Proteasome in A. thaliana

(2017) Charlotte Montacié et al.   Frontiers in Plant Science

Genome-wide analysis of chromatin packing inArabidopsis thalianaat single-gene resolution

(2016) Chang Liu et al.   GENOME RESEARCH

Erratum: Organization and function of the 3D genome

(2016) Boyan Bonev et al.   NATURE REVIEWS GENETICS

Paramutation and related phenomena in diverse species

(2016) Jay B. Hollick   NATURE REVIEWS GENETICS

Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome

(2016) Frédéric Pontvianne et al.   Cell Reports

Plant nucleolar DNA: Green light shed on the role of Nucleolin in genome organization

(2016) Claire Picart et al.   Nucleus

Plant nucleolar DNA: Green light shed on the role of Nucleolin in genome organization

(2016) Claire Picart et al.   Nucleus

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

(2015) Ya Guo et al.   CELL

The Role of Chromosome Domains in Shaping the Functional Genome

(2015) Tom Sexton et al.   CELL

Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci

(2015) Eirini Kaiserli et al.   DEVELOPMENTAL CELL

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

(2015) Adrian L. Sanborn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant-Specific Features of Ribosome Biogenesis

(2015) Benjamin L. Weis et al.   TRENDS IN PLANT SCIENCE

A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture

(2015) Teddy Jégu et al.   PLoS One

The impact of chromatin dynamics on plant light responses and circadian clock function

(2014) Fredy Barneche et al.   JOURNAL OF EXPERIMENTAL BOTANY

Hi-C Analysis in Arabidopsis Identifies the KNOT, a Structure with Similarities to the flamenco Locus of Drosophila

(2014) Stefan Grob et al.   MOLECULAR CELL

Noncoding Transcription by Alternative RNA Polymerases Dynamically Regulates an Auxin-Driven Chromatin Loop

(2014) Federico Ariel et al.   MOLECULAR CELL

Genome-wide Hi-C Analyses in Wild-Type and Mutants Reveal High-Resolution Chromatin Interactions in Arabidopsis

(2014) Suhua Feng et al.   MOLECULAR CELL

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

(2014) G. dos Santos et al.   NUCLEIC ACIDS RESEARCH

A DistalCCAAT/NUCLEAR FACTOR Y Complex Promotes Chromatin Looping at theFLOWERING LOCUS TPromoter and Regulates the Timing of Flowering inArabidopsis

(2014) Shuanghe Cao et al.   PLANT CELL

The BAF60 Subunit of the SWI/SNF Chromatin-Remodeling Complex Directly Controls the Formation of a Gene Loop at FLOWERING LOCUS C in Arabidopsis

(2014) T. Jegu et al.   PLANT CELL

Single-Cell Dynamics of Genome-Nuclear Lamina Interactions

(2013) Jop Kind et al.   CELL

A Conserved Genetic Pathway Determines Inflorescence Architecture in Arabidopsis and Rice

(2013) Chang Liu et al.   DEVELOPMENTAL CELL

Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states

(2013) F. Pontvianne et al.   GENES & DEVELOPMENT

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

LITTLE NUCLEI 1 and 4 Regulate Nuclear Morphology in Arabidopsis thaliana

(2013) Yuki Sakamoto et al.   PLANT AND CELL PHYSIOLOGY

Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture

(2013) Stefan Grob et al.   GENOME BIOLOGY

Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome

(2012) Tom Sexton et al.   CELL

A gene loop containing the floral repressor FLC is disrupted in the early phase of vernalization

(2012) Pedro Crevillén et al.   EMBO JOURNAL

The maize b1 paramutation control region causes epigenetic silencing in Drosophila melanogaster

(2012) Lori A. McEachern et al.   MOLECULAR GENETICS AND GENOMICS

Self-organization of domain structures by DNA-loop-extruding enzymes

(2012) E. Alipour et al.   NUCLEIC ACIDS RESEARCH

MORC Family ATPases Required for Heterochromatin Condensation and Gene Silencing

(2012) G. Moissiard et al.   SCIENCE

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

High-Resolution Whole-Genome Sequencing Reveals That Specific Chromatin Domains from Most Human Chromosomes Associate with Nucleoli

(2010) Silvana van Koningsbruggen et al.   MOLECULAR BIOLOGY OF THE CELL

Epigenetic Regulation of Repetitive Elements Is Attenuated by Prolonged Heat Stress inArabidopsis

(2010) Ales Pecinka et al.   PLANT CELL

RNA-mediated trans-communication can establish paramutation at the b1 locus in maize

(2010) M. Arteaga-Vazquez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Statistical Analysis of 3D Images Detects Regular Spatial Distributions of Centromeres and Chromocenters in Animal and Plant Nuclei

(2010) Philippe Andrey et al.   PLoS Computational Biology

Initial Genomics of the Human Nucleolus

(2010) Attila Németh et al.   PLoS Genetics

CTCF: Master Weaver of the Genome

(2009) Jennifer E. Phillips et al.   CELL

Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana

(2009) Veit Schubert et al.   CHROMOSOMA

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE

Tissue- and Expression Level-Specific Chromatin Looping at Maize b1 Epialleles

(2009) M. Louwers et al.   PLANT CELL

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

FLC or not FLC: the other side of vernalization

(2008) C. M. Alexandre et al.   JOURNAL OF EXPERIMENTAL BOTANY

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

(2008) Lars Guelen et al.   NATURE