Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication

TET1 is an important transcriptional activator of TNFα expression in macrophages

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Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

(2019) Yingyao Zhou et al.   Nature Communications

Profiling DNA methylation patterns of zebrafish liver associated with parental high dietary arachidonic acid

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Consistent inverse correlation between DNA methylation of the first intron and gene expression across tissues and species

(2018) Dafni Anastasiadi et al.   Epigenetics & Chromatin

Parental micronutrient deficiency distorts liver DNA methylation and expression of lipid genes associated with a fatty-liver-like phenotype in offspring

(2018) Kaja H. Skjærven et al.   Scientific Reports

TissueEnrich: Tissue-specific gene enrichment analysis

(2018) Ashish Jain et al.   BIOINFORMATICS

Contrasting effects of acute and chronic stress on the transcriptome, epigenome, and immune response of Atlantic salmon

(2018) Tamsyn M. Uren Webster et al.   Epigenetics

High fish density delays wound healing in Atlantic salmon (Salmo salar)

(2018) Lene Rydal Sveen et al.   Scientific Reports

Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon

(2017) Jérémy Le Luyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydroxymethylation of microRNA-365-3p Regulates Nociceptive Behaviors via Kcnh2

(2016) Zhiqiang Pan et al.   JOURNAL OF NEUROSCIENCE

Practical guidelines and consideration of using RRHP for 5hmC detection

(2016) Xueguang Sun et al.   Epigenomics

DNA hydroxymethylation controls cardiomyocyte gene expression in development and hypertrophy

(2016) Carolina M. Greco et al.   Nature Communications

A single generation of domestication heritably alters the expression of hundreds of genes

(2016) Mark R. Christie et al.   Nature Communications

The Evolution of Animal Domestication

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HTSeq--a Python framework to work with high-throughput sequencing data

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(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Population genomic analyses of early-phase Atlantic Salmon (Salmo salar) domestication/captive breeding

(2014) Hannu Mäkinen et al.   Evolutionary Applications

Does relaxed predation drive phenotypic divergence among insular populations?

(2014) A. Runemark et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Specific Gene Expression Responses to Parasite Genotypes Reveal Redundancy of Innate Immunity in Vertebrates

(2014) David Haase et al.   PLoS One

Reprogramming the Maternal Zebrafish Genome after Fertilization to Match the Paternal Methylation Pattern

(2013) Magdalena E. Potok et al.   CELL

Sperm, but Not Oocyte, DNA Methylome Is Inherited by Zebrafish Early Embryos

(2013) Lan Jiang et al.   CELL

The Control Region of Mitochondrial DNA Shows an Unusual CpG and Non-CpG Methylation Pattern

(2013) D. Bellizzi et al.   DNA RESEARCH

Early de novo DNA methylation and prolonged demethylation in the muscle lineage

(2013) Koji Tsumagari et al.   Epigenetics

Effects of domestication and growth hormone transgenesis on mRNA profiles in rainbow trout (Oncorhynchus mykiss)1

(2013) R. H. Devlin et al.   JOURNAL OF ANIMAL SCIENCE

Functions of Class V Myosins in Neurons

(2013) John A. Hammer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors

(2013) Andrey F. Z. Nascimento et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon

(2012) Anti Vasemägi et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells

(2011) H. Wu et al.   GENES & DEVELOPMENT

CREB and the CRTC co-activators: sensors for hormonal and metabolic signals

(2011) Judith Y. Altarejos et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Genetic adaptation to captivity can occur in a single generation

(2011) M. R. Christie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA methyltransferase 1, cytosine methylation, and cytosine hydroxymethylation in mammalian mitochondria

(2011) Lisa S. Shock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficacy of clove oil as anesthetic in handling and transportation of Nile tilapia, Oreochromis niloticus (Actinopterygii: Cichlidae) juveniles

(2011) Larissa N. Simões et al.   Zoologia

Genetic improvement of Nile tilapia (Oreochromis niloticus) with special reference to the work conducted by the WorldFish Center with the GIFT strain

(2011) Raul W. Ponzoni et al.   Reviews in Aquaculture

Fast Transcriptional Responses to Domestication in the Brook Charr Salvelinus fontinalis

(2010) C. Sauvage et al.   GENETICS

Molecular characterization and expression patterns of serine/arginine-rich specific kinase 3 (SPRK3) in porcine skeletal muscle

(2010) Yongjie Xu et al.   MOLECULAR BIOLOGY REPORTS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

(2010) Chun-Xiao Song et al.   NATURE BIOTECHNOLOGY

Rab8A and Rab13 are activated by insulin and regulate GLUT4 translocation in muscle cells

(2010) Y. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Domestication and growth hormone transgenesis cause similar changes in gene expression in coho salmon (Oncorhynchus kisutch)

(2009) R. H. Devlin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1

(2009) M. Tahiliani et al.   SCIENCE

Muscle cells engage Rab8A and myosin Vb in insulin-dependent GLUT4 translocation

(2008) Shuhei Ishikura et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Altered Expression of Growth Hormone/Insulin-Like Growth Factor I Axis Hormones in Domesticated Fish

(2008) Wendy E. Tymchuk et al.   ENDOCRINOLOGY