Positive selection rather than relaxation of functional constraint drives the evolution of vision during chicken domestication

Biallelic Mutations in UNC80 Cause Persistent Hypotonia, Encephalopathy, Growth Retardation, and Severe Intellectual Disability

(2016) Asbjørg Stray-Pedersen et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Evolution of Animal Domestication

(2014) Greger Larson et al.   Annual Review of Ecology Evolution and Systematics

Domestication of the Dog from the Wolf Was Promoted by Enhanced Excitatory Synaptic Plasticity: A Hypothesis

(2014) Yan Li et al.   Genome Biology and Evolution

Enrichment of pathogenic alleles in the brittle cornea gene, ZNF469, in keratoconus

(2014) Judith Lechner et al.   HUMAN MOLECULAR GENETICS

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

(2014) M. Carneiro et al.   SCIENCE

Genome-Wide Patterns of Genetic Variation in Two Domestic Chickens

(2013) Wen-Lang Fan et al.   Genome Biology and Evolution

Artificial Selection on Brain-Expressed Genes during the Domestication of Dog

(2013) Yan Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

ZNF469 frequently mutated in the brittle cornea syndrome (BCS) is a single exon gene possibly regulating the expression of several extracellular matrix components

(2013) Marianne Rohrbach et al.   MOLECULAR GENETICS AND METABOLISM

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

(2013) Erik Axelsson et al.   NATURE

The Impact of Domestication on the Chicken Optical Apparatus

(2013) Lina S.V. Roth et al.   PLoS One

The genomics of selection in dogs and the parallel evolution between dogs and humans

(2013) Guo-dong Wang et al.   Nature Communications

Let-7b regulates the expression of the growth hormone receptor gene in deletion-type dwarf chickens

(2012) Shumao Lin et al.   BMC GENOMICS

Epileptic encephalopathies of the Landau-Kleffner and continuous spike and waves during slow-wave sleep types: Genomic dissection makes the link with autism

(2012) Gaetan Lesca et al.   EPILEPSIA

Chicken domestication: an updated perspective based on mitochondrial genomes

(2012) Y-W Miao et al.   HEREDITY

Increased tumor cell proliferation in mantle cell lymphoma is associated with elevated insulin-like growth factor 2 mRNA-binding protein 3 expression

(2012) Elena M Hartmann et al.   MODERN PATHOLOGY

Improved whole-chromosome phasing for disease and population genetic studies

(2012) Olivier Delaneau et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Visual Input Modulates Audiomotor Function via Hypothalamic Dopaminergic Neurons through a Cooperative Mechanism

(2012) Yu Mu et al.   NEURON

Gene therapy rescues photoreceptor blindness in dogs and paves the way for treating human X-linked retinitis pigmentosa

(2012) W. A. Beltran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using electroretinograms to assess flicker fusion frequency in domestic hens Gallus gallus domesticus

(2012) Thomas J. Lisney et al.   VISION RESEARCH

Sensory basis of vigilance behavior in birds: Synthesis and future prospects

(2011) Esteban Fernández-Juricic   BEHAVIOURAL PROCESSES

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

(2011) Yong Kong   GENOMICS

Insulin Growth Factor-2 Binding Protein 3 (IGF2BP3) Is a Glioblastoma-specific Marker That Activates Phosphatidylinositol 3-Kinase/Mitogen-activated Protein Kinase (PI3K/MAPK) Pathways by Modulating IGF-2

(2011) Ramaswamy Suvasini et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

g:Profiler—a web server for functional interpretation of gene lists (2011 update)

(2011) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

Behavioural assessment of flicker fusion frequency in chicken Gallus gallus domesticus

(2011) Thomas J. Lisney et al.   VISION RESEARCH

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Development of light response and GABAergic excitation-to-inhibition switch in zebrafish retinal ganglion cells

(2010) Rong-wei Zhang et al.   JOURNAL OF PHYSIOLOGY-LONDON

Domestication Relaxed Selective Constraints on the Yak Mitochondrial Genome

(2010) Zhaofeng Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Extracellular Calcium Controls Background Current and Neuronal Excitability via an UNC79-UNC80-NALCN Cation Channel Complex

(2010) Boxun Lu et al.   NEURON

Accurate quantification of transcriptome from RNA-Seq data by effective length normalization

(2010) Soohyun Lee et al.   NUCLEIC ACIDS RESEARCH

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

RD3, the protein associated with Leber congenital amaurosis type 12, is required for guanylate cyclase trafficking in photoreceptor cells

(2010) S. Azadi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular evolution of genes in avian genomes

(2010) Kiwoong Nam et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The E646D-ATP13A4 Mutation Associated with Autism Reveals a Defect in Calcium Regulation

(2009) Janaki Vallipuram et al.   CELLULAR AND MOLECULAR NEUROBIOLOGY

Constructing genomic maps of positive selection in humans: Where do we go from here?

(2009) J. M. Akey   GENOME RESEARCH

Molecular screening of 980 cases of suspected hereditary optic neuropathy with a report on 77 novelOPA1mutations

(2009) Marc Ferré et al.   HUMAN MUTATION

OPA1-associated disorders: Phenotypes and pathophysiology

(2009) Patrizia Amati-Bonneau et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

TRPM1 is required for the depolarizing light response in retinal ON-bipolar cells

(2009) Catherine W. Morgans et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

11-cis- and All-trans-Retinols Can Activate Rod Opsin: Rational Design of the Visual Cycle†

(2008) Masahiro Kono et al.   BIOCHEMISTRY