标题
Cell Atlas technologies and insights into tissue architecture
作者
关键词
-
出版物
BIOCHEMICAL JOURNAL
Volume 477, Issue 8, Pages 1427-1442
出版商
Portland Press Ltd.
发表日期
2020-04-28
DOI
10.1042/bcj20190341
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Cellular and Molecular Probing of Intact Human Organs
- (2020) Shan Zhao et al. CELL
- Distinct microbial and immune niches of the human colon
- (2020) Kylie R. James et al. NATURE IMMUNOLOGY
- A cell atlas of human thymic development defines T cell repertoire formation
- (2020) Jong-Eun Park et al. SCIENCE
- Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map
- (2020) Omer Ali Bayraktar et al. NATURE NEUROSCIENCE
- Single-Cell Transcriptome Analysis Maps the Developmental Track of the Human Heart
- (2019) Yueli Cui et al. Cell Reports
- Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution
- (2019) Samuel G. Rodriques et al. SCIENCE
- Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+
- (2019) Chee-Huat Linus Eng et al. NATURE
- The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution
- (2019) Deanne M. Taylor et al. DEVELOPMENTAL CELL
- Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics
- (2019) Leif S. Ludwig et al. CELL
- The Human Lung Cell Atlas - A high-resolution reference map of the human lung in health and disease
- (2019) Herbert B Schiller et al. AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY
- SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues
- (2019) Jocelyn Y. Kishi et al. NATURE METHODS
- Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis
- (2019) Silas Maniatis et al. SCIENCE
- Single-Cell RNA-Seq Technologies and Related Computational Data Analysis
- (2019) Geng Chen et al. Frontiers in Genetics
- A human liver cell atlas reveals heterogeneity and epithelial progenitors
- (2019) Nadim Aizarani et al. NATURE
- Neuronal vulnerability and multilineage diversity in multiple sclerosis
- (2019) Lucas Schirmer et al. NATURE
- A cellular census of human lungs identifies novel cell states in health and in asthma
- (2019) Felipe A. Vieira Braga et al. NATURE MEDICINE
- A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation
- (2019) Damon Polioudakis et al. NEURON
- Stem cell differentiation trajectories in Hydra resolved at single-cell resolution
- (2019) Stefan Siebert et al. SCIENCE
- Dissecting the transcriptome landscape of the human fetal neural retina and retinal pigment epithelium by single-cell RNA-seq analysis
- (2019) Yuqiong Hu et al. PLOS BIOLOGY
- High-definition spatial transcriptomics for in situ tissue profiling
- (2019) Sanja Vickovic et al. NATURE METHODS
- Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression
- (2019) Chenglong Xia et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution
- (2019) Jonathan S. Packer et al. SCIENCE
- The Malaria Cell Atlas: Single parasite transcriptomes across the complete Plasmodium life cycle
- (2019) Virginia M. Howick et al. SCIENCE
- Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq
- (2018) Arnau Sebé-Pedrós et al. CELL
- Mapping the Mouse Cell Atlas by Microwell-Seq
- (2018) Xiaoping Han et al. CELL
- Mapping human development at single-cell resolution
- (2018) Sam Behjati et al. DEVELOPMENT
- Tracing the temporal-spatial transcriptome landscapes of the human fetal digestive tract using single-cell RNA-sequencing
- (2018) Shuai Gao et al. NATURE CELL BIOLOGY
- Three-dimensional intact-tissue sequencing of single-cell transcriptional states
- (2018) Xiao Wang et al. SCIENCE
- Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
- (2018) Alexander B. Rosenberg et al. SCIENCE
- Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation
- (2018) Jonathan Packer et al. TRENDS IN GENETICS
- Advances in CLARITY‑based tissue clearing and imaging (Review)
- (2018) Hao Du et al. Experimental and Therapeutic Medicine
- scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
- (2018) Stephen J. Clark et al. Nature Communications
- The effects of death and post-mortem cold ischemia on human tissue transcriptomes
- (2018) Pedro G. Ferreira et al. Nature Communications
- A practical solution for preserving single cells for RNA sequencing
- (2018) Moustafa Attar et al. Scientific Reports
- Automated cell-type classification in intact tissues by single-cell molecular profiling
- (2018) Monica Nagendran et al. eLife
- Early metazoan cell type diversity and the evolution of multicellular gene regulation
- (2018) Arnau Sebé-Pedrós et al. Nature Ecology & Evolution
- Single-cell RNA-seq reveals the diversity of trophoblast subtypes and patterns of differentiation in the human placenta
- (2018) Yawei Liu et al. CELL RESEARCH
- Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney
- (2018) Rajasree Menon et al. DEVELOPMENT
- The adult human testis cell atlas via single cell RNA sequencing
- (2018) J. Guo et al. FERTILITY AND STERILITY
- A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte
- (2018) Lindsey W. Plasschaert et al. NATURE
- Allergic inflammatory memory in human respiratory epithelial progenitor cells
- (2018) Jose Ordovas-Montanes et al. NATURE
- A revised airway epithelial hierarchy includes CFTR-expressing ionocytes
- (2018) Daniel T. Montoro et al. NATURE
- Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors
- (2018) Matthew D. Young et al. SCIENCE
- Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis
- (2018) Paul A Reyfman et al. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE
- Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
- (2018) et al. NATURE
- Single-cell reconstruction of the early maternal–fetal interface in humans
- (2018) Roser Vento-Tormo et al. NATURE
- Neoadjuvant immune checkpoint blockade in high-risk resectable melanoma
- (2018) Rodabe N. Amaria et al. NATURE MEDICINE
- Neoadjuvant versus adjuvant ipilimumab plus nivolumab in macroscopic stage III melanoma
- (2018) Christian U. Blank et al. NATURE MEDICINE
- Spatial organization of the somatosensory cortex revealed by osmFISH
- (2018) Simone Codeluppi et al. NATURE METHODS
- Single-cell stabilization method identifies gonadotrope transcriptional dynamics and pituitary cell type heterogeneity
- (2018) Frederique Ruf-Zamojski et al. NUCLEIC ACIDS RESEARCH
- Single-nucleus and single-cell transcriptomes compared in matched cortical cell types
- (2018) Trygve E. Bakken et al. PLoS One
- Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations
- (2018) Sonya A. MacParland et al. Nature Communications
- Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution
- (2018) Jeffrey B. Cheng et al. Cell Reports
- A single-cell survey of the human first-trimester placenta and decidua
- (2018) Hemant Suryawanshi et al. Science Advances
- Multiplexed quantification of proteins and transcripts in single cells
- (2017) Vanessa M Peterson et al. NATURE BIOTECHNOLOGY
- An atlas of B-cell clonal distribution in the human body
- (2017) Wenzhao Meng et al. NATURE BIOTECHNOLOGY
- Simultaneous epitope and transcriptome measurement in single cells
- (2017) Marlon Stoeckius et al. NATURE METHODS
- Profiling the transcriptome with RNA SPOTs
- (2017) Chee-Huat Linus Eng et al. NATURE METHODS
- Massively parallel single-nucleus RNA-seq with DroNc-seq
- (2017) Naomi Habib et al. NATURE METHODS
- Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations
- (2017) Susanne C van den Brink et al. NATURE METHODS
- Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput
- (2017) Todd M Gierahn et al. NATURE METHODS
- Efficient in situ barcode sequencing using padlock probe-based BaristaSeq
- (2017) Xiaoyin Chen et al. NUCLEIC ACIDS RESEARCH
- Comprehensive single-cell transcriptional profiling of a multicellular organism
- (2017) Junyue Cao et al. SCIENCE
- A subcellular map of the human proteome
- (2017) Peter J. Thul et al. SCIENCE
- Single-Cell Multiomics: Multiple Measurements from Single Cells
- (2017) Iain C. Macaulay et al. TRENDS IN GENETICS
- Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis
- (2017) Emmanouil I. Athanasiadis et al. Nature Communications
- Massively parallel digital transcriptional profiling of single cells
- (2017) Grace X. Y. Zheng et al. Nature Communications
- Spatial detection of fetal marker genes expressed at low level in adult human heart tissue
- (2017) Michaela Asp et al. Scientific Reports
- Mass Cytometry: Single Cells, Many Features
- (2016) Matthew H. Spitzer et al. CELL
- Single-cell triple omics sequencing reveals genetic, epigenetic and transcriptomic heterogeneity in hepatocellular carcinomas
- (2016) Yu Hou et al. CELL RESEARCH
- Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues
- (2016) Taeyun Ku et al. NATURE BIOTECHNOLOGY
- Shrinkage-mediated imaging of entire organs and organisms using uDISCO
- (2016) Chenchen Pan et al. NATURE METHODS
- Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons
- (2016) Suguna Rani Krishnaswami et al. Nature Protocols
- Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq
- (2016) Iain C Macaulay et al. Nature Protocols
- In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus
- (2016) Sheel Shah et al. NEURON
- Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
- (2016) P. L. Stahl et al. SCIENCE
- Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain
- (2016) B. B. Lake et al. SCIENCE
- Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons
- (2016) Naomi Habib et al. SCIENCE
- Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal–foetal interface during pregnancy
- (2016) Andrew C. Nelson et al. Nature Communications
- Nuclear RNA-seq of single neurons reveals molecular signatures of activation
- (2016) Benjamin Lacar et al. Nature Communications
- Development of an Automated and Sensitive Microfluidic Device for Capturing and Characterizing Circulating Tumor Cells (CTCs) from Clinical Blood Samples
- (2016) Priya Gogoi et al. PLoS One
- Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
- (2015) Allon M. Klein et al. CELL
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- (2015) Evan Z. Macosko et al. CELL
- Integrated genome and transcriptome sequencing of the same cell
- (2015) Siddharth S Dey et al. NATURE BIOTECHNOLOGY
- Fixed single-cell transcriptomic characterization of human radial glial diversity
- (2015) Elliot R Thomsen et al. NATURE METHODS
- G&T-seq: parallel sequencing of single-cell genomes and transcriptomes
- (2015) Iain C Macaulay et al. NATURE METHODS
- Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues
- (2015) Je Hyuk Lee et al. Nature Protocols
- Spatially resolved, highly multiplexed RNA profiling in single cells
- (2015) K. H. Chen et al. SCIENCE
- Combinatorial labeling of single cells for gene expression cytometry
- (2015) H. C. Fan et al. SCIENCE
- Expansion microscopy
- (2015) F. Chen et al. SCIENCE
- Scalable microfluidics for single-cell RNA printing and sequencing
- (2015) Sayantan Bose et al. GENOME BIOLOGY
- Validation of noise models for single-cell transcriptomics
- (2014) Dominic Grün et al. NATURE METHODS
- Single-cell in situ RNA profiling by sequential hybridization
- (2014) Eric Lubeck et al. NATURE METHODS
- Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells
- (2014) Q. Deng et al. SCIENCE
- Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types
- (2014) D. A. Jaitin et al. SCIENCE
- Co-detection and sequencing of genes and transcripts from the same single cells facilitated by a microfluidics platform
- (2014) Lin Han et al. Scientific Reports
- In situ sequencing for RNA analysis in preserved tissue and cells
- (2013) Rongqin Ke et al. NATURE METHODS
- Smart-seq2 for sensitive full-length transcriptome profiling in single cells
- (2013) Simone Picelli et al. NATURE METHODS
- RNA-sequencing from single nuclei
- (2013) R. V. Grindberg et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
- (2012) Daniel Ramsköld et al. NATURE BIOTECHNOLOGY
- Highly multiplexed and strand-specific single-cell RNA 5′ end sequencing
- (2012) Saiful Islam et al. Nature Protocols
- Three-dimensional imaging of solvent-cleared organs using 3DISCO
- (2012) Ali Ertürk et al. Nature Protocols
- CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification
- (2012) Tamar Hashimshony et al. Cell Reports
- RNAscope
- (2011) Fay Wang et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Single-cell dissection of transcriptional heterogeneity in human colon tumors
- (2011) Piero Dalerba et al. NATURE BIOTECHNOLOGY
- Resolution of Cell Fate Decisions Revealed by Single-Cell Gene Expression Analysis from Zygote to Blastocyst
- (2010) Guoji Guo et al. DEVELOPMENTAL CELL
- mRNA-Seq whole-transcriptome analysis of a single cell
- (2009) Fuchou Tang et al. NATURE METHODS
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started