Comparison of Japanese and Indian intestinal microbiota shows diet-dependent interaction between bacteria and fungi

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

(2019) Jason Lloyd-Price et al.   NATURE

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production

(2017) Nicole Reichardt et al.   ISME Journal

Complex pectin metabolism by gut bacteria reveals novel catalytic functions

(2017) Didier Ndeh et al.   NATURE

Fungal ITS1 Deep-Sequencing Strategies to Reconstruct the Composition of a 26-Species Community and Evaluation of the Gut Mycobiota of Healthy Japanese Individuals

(2017) Daisuke Motooka et al.   Frontiers in Microbiology

High-Fat Diet Changes Fungal Microbiomes and Interkingdom Relationships in the Murine Gut

(2017) Timothy Heisel et al.   mSphere

Modulation of Candida albicans Biofilm by Different Carbon Sources

(2016) Suma C. Pemmaraju et al.   MYCOPATHOLOGIA

Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides

(2015) Audrey Rivière et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella

(2015) Petia Kovatcheva-Datchary et al.   Cell Metabolism

The Virome in Host Health and Disease

(2015) Ken Cadwell   IMMUNITY

Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism

(2015) Fiona Cuskin et al.   NATURE

Activation of HIF-1α and LL-37 by commensal bacteria inhibits Candida albicans colonization

(2015) Di Fan et al.   NATURE MEDICINE

Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides

(2015) M. Wu et al.   SCIENCE

Diversity in gut bacterial community of school-age children in Asia

(2015) Jiro Nakayama et al.   Scientific Reports

The contribution of wheat to human diet and health

(2015) Peter R. Shewry et al.   Food and Energy Security

Complementary Amplicon-Based Genomic Approaches for the Study of Fungal Communities in Humans

(2015) Timothy Heisel et al.   PLoS One

The Virome in Mammalian Physiology and Disease

(2014) Herbert W. Virgin   CELL

Saccharomyces boulardii Administration Changes Gut Microbiota and Reduces Hepatic Steatosis, Low-Grade Inflammation, and Fat Mass in Obese and Type 2 Diabetic db/db Mice

(2014) A. Everard et al.   mBio

Gut microbiome of the Hadza hunter-gatherers

(2014) Stephanie L. Schnorr et al.   Nature Communications

High-fat diet alters gut microbiota physiology in mice

(2013) Hannelore Daniel et al.   ISME Journal

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment

(2013) Serena Dollive et al.   PLoS One

Human gut microbiota community structures in urban and rural populations in Russia

(2013) Alexander V. Tyakht et al.   Nature Communications

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

(2013) Jose U Scher et al.   eLife

Candida albicans and Bacterial Microbiota Interactions in the Cecum during Recolonization following Broad-Spectrum Antibiotic Therapy

(2012) Katie L. Mason et al.   INFECTION AND IMMUNITY

Gut microbiota composition correlates with diet and health in the elderly

(2012) Marcus J. Claesson et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis

(2012) I. D. Iliev et al.   SCIENCE

Interactions between parasites and microbial communities in the human gut

(2012) Federica Berrilli et al.   Frontiers in Cellular and Infection Microbiology

Highly Sensitive MALDI Analyses of Glycans by a New Aminoquinoline-Labeling Method Using 3-Aminoquinoline/α-Cyano-4-hydroxycinnamic Acid Liquid Matrix

(2011) Kaoru Kaneshiro et al.   ANALYTICAL CHEMISTRY

Interplay between the Gastric Bacterial Microbiota and Candida albicans during Postantibiotic Recolonization and Gastritis

(2011) Katie L. Mason et al.   INFECTION AND IMMUNITY

Evaluation of fluorescence in situ hybridisation (FISH) for the identification of Candida albicans in comparison with three phenotypic methods

(2011) Anna Lakner et al.   MYCOSES

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Hemicelluloses

(2010) Henrik Vibe Scheller et al.   Annual Review of Plant Biology

Specificity of Polysaccharide Use in Intestinal Bacteroides Species Determines Diet-Induced Microbiota Alterations

(2010) Erica D. Sonnenburg et al.   CELL

Functional Diversity of Four Glycoside Hydrolase Family 3 Enzymes from the Rumen Bacterium Prevotella bryantii B14

(2010) D. Dodd et al.   JOURNAL OF BACTERIOLOGY

Comparative Analyses of Two Thermophilic Enzymes Exhibiting both  -1,4 Mannosidic and  -1,4 Glucosidic Cleavage Activities from Caldanaerobius polysaccharolyticus

(2010) Y. Han et al.   JOURNAL OF BACTERIOLOGY

Gut colonization byCandida albicansaggravates inflammation in the gut and extra-gut tissues in mice

(2010) Kei Sonoyama et al.   MEDICAL MYCOLOGY

Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes

(2010) Dylan Dodd et al.   MOLECULAR MICROBIOLOGY

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age

(2009) D Mariat et al.   BMC MICROBIOLOGY

Biochemical Analysis of a  -D-Xylosidase and a Bifunctional Xylanase-Ferulic Acid Esterase from a Xylanolytic Gene Cluster in Prevotella ruminicola 23

(2009) D. Dodd et al.   JOURNAL OF BACTERIOLOGY

Predominant Role of Host Genetics in Controlling the Composition of Gut Microbiota

(2008) Zaruhi A. Khachatryan et al.   PLoS One