Comprehensive characterization of cell-free tumor DNA in plasma and urine of patients with renal tumors

Untargeted Assessment of Tumor Fractions in Plasma for Monitoring and Prognostication from Metastatic Breast Cancer Patients Undergoing Systemic Treatment

(2019) Christoph Suppan et al.   Cancers

Tracking Cancer Evolution Reveals Constrained Routes to Metastases: TRACERx Renal

(2018) Samra Turajlic et al.   CELL

The Role of Circulating Tumor DNA in Renal Cell Carcinoma

(2018) Paulo G. Bergerot et al.   CURRENT TREATMENT OPTIONS IN ONCOLOGY

Detection and localization of surgically resectable cancers with a multi-analyte blood test

(2018) Joshua D. Cohen et al.   SCIENCE

Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing

(2018) Sabine Hellwig et al.   PLoS One

Measurement of Plasma Cell-Free Mitochondrial Tumor DNA Improves Detection of Glioblastoma in Patient-Derived Orthotopic Xenograft Models

(2018) Richard Mair et al.   CANCER RESEARCH

Clinical significance of the mutational landscape and fragmentation of circulating‐tumor DNA in renal cell carcinoma

(2018) Yoshiyuki Yamamoto et al.   CANCER SCIENCE

Detection of cell‐free DNA fragmentation and copy number alterations in cerebrospinal fluid from glioma patients

(2018) Florent Mouliere et al.   EMBO Molecular Medicine

Sensitive tumour detection and classification using plasma cell-free DNA methylomes

(2018) Shu Yi Shen et al.   NATURE

Current and future perspectives of liquid biopsies in genomics-driven oncology

(2018) Ellen Heitzer et al.   NATURE REVIEWS GENETICS

Detection and surveillance of bladder cancer using urine tumor DNA

(2018) Jonathan C. Dudley et al.   Cancer Discovery

Evolution of Circulating Tumor DNA Profile from First-line to Subsequent Therapy in Metastatic Renal Cell Carcinoma

(2017) Sumanta K. Pal et al.   EUROPEAN UROLOGY

Detecting circulating tumor DNA in renal cancer: An open challenge

(2017) Claudia Corrò et al.   EXPERIMENTAL AND MOLECULAR PATHOLOGY

Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution

(2017) Christopher Abbosh et al.   NATURE

Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors

(2017) Viktor A. Adalsteinsson et al.   Nature Communications

Association Of Plasma And Urinary Mutant DNA With Clinical Outcomes In Muscle Invasive Bladder Cancer

(2017) K. M. Patel et al.   Scientific Reports

Genomic complexity of urothelial bladder cancer revealed in urinary cfDNA

(2016) Fiona S Togneri et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Whole-genome plasma sequencing reveals focal amplifications as a driving force in metastatic prostate cancer

(2016) Peter Ulz et al.   Nature Communications

Sunitinib Treatment Exacerbates Intratumoral Heterogeneity in Metastatic Renal Cancer

(2015) G. D. Stewart et al.   CLINICAL CANCER RESEARCH

Rapid Identification of Plasma DNA Samples with Increased ctDNA Levels by a Modified FAST-SeqS Approach

(2015) J. Belic et al.   CLINICAL CHEMISTRY

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing

(2015) Tyler S. Alioto et al.   Nature Communications

Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer

(2015) Muhammed Murtaza et al.   Nature Communications

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

(2014) Ilari Scheinin et al.   GENOME RESEARCH

Cancer biomarkers: Written in blood

(2014) Ed Yong   NATURE

Detection of Circulating Tumor DNA in Early- and Late-Stage Human Malignancies

(2014) C. Bettegowda et al.   Science Translational Medicine

Changes in Colorectal Carcinoma Genomes under Anti-EGFR Therapy Identified by Whole-Genome Plasma DNA Sequencing

(2014) Sumitra Mohan et al.   PLoS Genetics

Comprehensive molecular characterization of clear cell renal cell carcinoma

(2013)   NATURE

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

(2013) Kristian Cibulskis et al.   NATURE BIOTECHNOLOGY

Integrated molecular analysis of clear-cell renal cell carcinoma

(2013) Yusuke Sato et al.   NATURE GENETICS

Analysis of Circulating Tumor DNA to Monitor Metastatic Breast Cancer

(2013) Sarah-Jane Dawson et al.   NEW ENGLAND JOURNAL OF MEDICINE

Tumor-associated copy number changes in the circulation of patients with prostate cancer identified through whole-genome sequencing

(2013) Ellen Heitzer et al.   Genome Medicine

Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

(2012) Marco Gerlinger et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS