Integrative transcriptome analysis discloses the molecular basis of a heterogeneous fungal phytopathogen complex, Rhizoctonia solani AG-1 subgroups
出版年份 2019 全文链接
标题
Integrative transcriptome analysis discloses the molecular basis of a heterogeneous fungal phytopathogen complex, Rhizoctonia solani AG-1 subgroups
作者
关键词
-
出版物
Scientific Reports
Volume 9, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-12-23
DOI
10.1038/s41598-019-55734-2
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Development and Characterization of Novel Genic-SSR Markers in Apple-Juniper Rust Pathogen Gymnosporangium yamadae (Pucciniales: Pucciniaceae) Using Next-Generation Sequencing
- (2018) Si-Qi Tao et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
- (2018) Jana Sperschneider et al. MOLECULAR PLANT PATHOLOGY
- dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
- (2018) Han Zhang et al. NUCLEIC ACIDS RESEARCH
- UPLC-QTOF-MS metabolomics analysis revealed the contributions of metabolites to the pathogenesis of Rhizoctonia solani strain AG-1-IA
- (2018) Wenjin Hu et al. PLoS One
- Gene cluster conservation provides insight into cercosporin biosynthesis and extends production to the genusColletotrichum
- (2018) Ronnie de Jonge et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions
- (2018) Naoki Yamamoto et al. Rice
- Development of simple sequence repeat markers in the halophytic turf grass Sporobolus virginicus and transferable genotyping across multiple grass genera/species/genotypes
- (2017) Chisato Endo et al. EUPHYTICA
- ApoplastP : prediction of effectors and plant proteins in the apoplast using machine learning
- (2017) Jana Sperschneider et al. NEW PHYTOLOGIST
- A paralogous decoy protects Phytophthora sojae apoplastic effector PsXEG1 from a host inhibitor
- (2017) Zhenchuan Ma et al. SCIENCE
- Comparative Transcriptome Analyses of Gene Expression Changes Triggered by Rhizoctonia solani AG1 IA Infection in Resistant and Susceptible Rice Varieties
- (2017) Jinfeng Zhang et al. Frontiers in Plant Science
- Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors
- (2017) Jonathan P. Anderson et al. Scientific Reports
- Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes
- (2016) Daniel Wibberg et al. BMC GENOMICS
- PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database
- (2016) Martin Urban et al. NUCLEIC ACIDS RESEARCH
- 3-Methylthiopropionic Acid of Rhizoctonia solani AG-3 and Its Role in the Pathogenicity of the Fungus
- (2016) Frederick Kankam et al. Plant Pathology Journal
- Molecular Characterization of A Novel Effector Expansin-like Protein from Heterodera avenae that Induces Cell Death in Nicotiana benthamiana
- (2016) Jing Liu et al. Scientific Reports
- Fungal Effectors and Plant Susceptibility
- (2015) Libera Lo Presti et al. Annual Review of Plant Biology
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Death of a dogma: eukaryotic mRNAs can code for more than one protein
- (2015) Hélène Mouilleron et al. NUCLEIC ACIDS RESEARCH
- KEGG as a reference resource for gene and protein annotation
- (2015) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- The MEME Suite
- (2015) Timothy L. Bailey et al. NUCLEIC ACIDS RESEARCH
- A Phytophthora sojae cytoplasmic effector mediates disease resistance and abiotic stress tolerance in Nicotiana benthamiana
- (2015) Meixiang Zhang et al. Scientific Reports
- Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R. solani AG1-IA, AG1-IB, AG3 and AG8 Isolates
- (2015) Daniel Wibberg et al. PLoS One
- Identification and functional analysis of AG1-IA specific genes of Rhizoctonia solani
- (2014) Srayan Ghosh et al. CURRENT GENETICS
- Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)
- (2014) Daniel Wibberg et al. Fungal Biology
- Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8
- (2014) James K. Hane et al. PLoS Genetics
- TCC: an R package for comparing tag count data with robust normalization strategies
- (2013) Jianqiang Sun et al. BMC BIOINFORMATICS
- Determinants of Regioselective Hydroxylation in the Fungal Polysaccharide Monooxygenases
- (2013) Van V. Vu et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- The ethylene receptor ETR1 is required forFusarium oxysporumpathogenicity
- (2013) I. S. Pantelides et al. PLANT PATHOLOGY
- Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts
- (2013) S. Hacquard et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The evolution and pathogenic mechanisms of the rice sheath blight pathogen
- (2013) Aiping Zheng et al. Nature Communications
- Death Be Not Proud—Cell Death Control in Plant Fungal Interactions
- (2013) Martin B. Dickman et al. PLoS Pathogens
- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
- (2012) Marcel H. Schulz et al. BIOINFORMATICS
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- Trichoderma harzianum ETS 323-Mediated Resistance in Brassica oleracea var. capitata to Rhizoctonia solani Involves the Novel Expression of a Glutathione S-Transferase and a Deoxycytidine Deaminase
- (2012) Marthandam Asokan Shibu et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Gene expression profiling of the plant pathogenic basidiomycetous fungus Rhizoctonia solani AG 4 reveals putative virulence factors
- (2012) D. K. Lakshman et al. MYCOLOGIA
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- Nuclear and Genome Dynamics in Multinucleate Ascomycete Fungi
- (2011) Marcus Roper et al. CURRENT BIOLOGY
- The Genome Portal of the Department of Energy Joint Genome Institute
- (2011) I. V. Grigoriev et al. NUCLEIC ACIDS RESEARCH
- A burst of plant NADPH oxidases
- (2011) Daniel Marino et al. TRENDS IN PLANT SCIENCE
- FunSecKB: the Fungal Secretome KnowledgeBase
- (2011) G. Lum et al. Database-The Journal of Biological Databases and Curation
- Cytomolecular aspects of rice sheath blight caused by Rhizoctonia solani
- (2010) Parissa Taheri et al. EUROPEAN JOURNAL OF PLANT PATHOLOGY
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Fungal Effector Proteins
- (2009) Ioannis Stergiopoulos et al. Annual Review of Phytopathology
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Recent advances in ethylene research
- (2009) Z. Lin et al. JOURNAL OF EXPERIMENTAL BOTANY
- Alternative translation start sites and hidden coding potential of eukaryotic mRNAs
- (2008) Alex V. Kochetov BIOESSAYS
- PredGPI: a GPI-anchor predictor
- (2008) Andrea Pierleoni et al. BMC BIOINFORMATICS
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