Expressivity of the key genes associated with seed and pod development is highly regulated via lncRNAs and miRNAs in Pigeonpea

Genome-wide identification and characterization of lncRNAs and miRNAs in cluster bean ( Cyamopsis tetragonoloba )

(2018) Sarika Sahu et al.   GENE

Auxin Information Processing; Partners and Interactions beyond the Usual Suspects

(2017) Thea van den Berg et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Auxin Signaling

(2017) Ottoline Leyser   PLANT PHYSIOLOGY

Genome-wide identification, characterization and expression profile of aquaporin gene family in flax (Linum usitatissimum)

(2017) S. M. Shivaraj et al.   Scientific Reports

Locating rearrangement events in a phylogeny based on highly fragmented assemblies

(2016) Chunfang Zheng et al.   BMC GENOMICS

Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.

(2016) Sung-Ryul Kim et al.   Rice

Genome-wide analysis of long intergenic non-coding RNAs in chickpea and their potential role in flower development

(2016) Niraj Khemka et al.   Scientific Reports

The FOUR LIPS and MYB88 transcription factor genes are widely expressed in Arabidopsis thaliana during development

(2015) Qin Lei et al.   AMERICAN JOURNAL OF BOTANY

Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

(2015) Chunyan Fan et al.   BMC GENOMICS

Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

(2015) Chunying Kang et al.   BMC GENOMICS

Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures

(2015) Chandran Nithin et al.   BMC PLANT BIOLOGY

The UDP-glucose: glycoprotein glucosyltransferase (UGGT), a key enzyme in ER quality control, plays a significant role in plant growth as well as biotic and abiotic stress in Arabidopsis thaliana

(2015) Francisca Blanco-Herrera et al.   BMC PLANT BIOLOGY

Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing

(2015) Tian-Zuo Wang et al.   BMC PLANT BIOLOGY

Dirigent Protein-Mediated Lignan and Cyanogenic Glucoside Formation in Flax Seed: Integrated Omics and MALDI Mass Spectrometry Imaging

(2015) Doralyn S. Dalisay et al.   JOURNAL OF NATURAL PRODUCTS

Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypiumspp.)

(2015) Maojun Wang et al.   NEW PHYTOLOGIST

The VQ Motif-Containing Protein Family of Plant-Specific Transcriptional Regulators

(2015) Yanjun Jing et al.   PLANT PHYSIOLOGY

High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea

(2015) Sangeeta Srivastava et al.   PLANT SCIENCE

Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

(2014) H. Wang et al.   GENOME RESEARCH

MicroRNA-Based Biotechnology for Plant Improvement

(2014) Baohong Zhang et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa

(2014) Peng Shuai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

Identification and characterization of microRNAs in the developing maize endosperm

(2013) Yong Gu et al.   GENOMICS

The Role of Intact Oleosin for Stabilization and Function of Oleosomes

(2013) Sania Maurer et al.   JOURNAL OF PHYSICAL CHEMISTRY B

SWEET sugar transporters for phloem transport and pathogen nutrition

(2013) Li-Qing Chen   NEW PHYTOLOGIST

Widespread Long Noncoding RNAs as Endogenous Target Mimics for MicroRNAs in Plants

(2013) H.-J. Wu et al.   PLANT PHYSIOLOGY

On the classification of long non-coding RNAs

(2013) Lina Ma et al.   RNA Biology

Late Embryogenesis Abundant (LEA) proteins in legumes

(2013) Marina Battaglia et al.   Frontiers in Plant Science

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

Direct mapping of symbolic DNA sequence into frequency domain in global repeat map algorithm

(2012) Matko Glunčić et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Correction: MiR-214 Targets β-Catenin Pathway to Suppress Invasion, Stem-Like Traits and Recurrence of Human Hepatocellular Carcinoma

(2012) Hongping Xia et al.   PLoS One

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

(2012) J. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Seed Traits and Genes Important for Translational Biology--Highlights from Recent Discoveries

(2011) C. Martinez-Andujar et al.   PLANT AND CELL PHYSIOLOGY

Chloroplast lipid droplet type II NAD(P)H quinone oxidoreductase is essential for prenylquinone metabolism and vitamin K1 accumulation

(2011) L. Eugeni Piller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SPIKE1 Signals Originate from and Assemble Specialized Domains of the Endoplasmic Reticulum

(2010) Chunhua Zhang et al.   CURRENT BIOLOGY

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide computational identification and manual annotation of human long noncoding RNA genes

(2010) H. Jia et al.   RNA

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 Are Polygalacturonases Required for Cell Separation during Reproductive Development in Arabidopsis

(2009) M. Ogawa et al.   PLANT CELL

RNAplex: a fast tool for RNA–RNA interaction search

(2008) Hakim Tafer et al.   BIOINFORMATICS

Bioinformatic analysis of the CLE signaling peptide family

(2008) Karsten Oelkers et al.   BMC PLANT BIOLOGY

Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses

(2008) B. Ben Amor et al.   GENOME RESEARCH

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY