Stem rust resistance in wheat is suppressed by a subunit of the mediator complex

Shifting the limits in wheat research and breeding using a fully annotated reference genome

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A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Kenyan Isolates of Puccinia graminis f. sp. tritici from 2008 to 2014: Virulence to SrTmp in the Ug99 Race Group and Implications for Breeding Programs

(2016) Maria Newcomb et al.   PHYTOPATHOLOGY

Ancient DNA from 8400 Year-Old Çatalhöyük Wheat: Implications for the Origin of Neolithic Agriculture

(2016) Hatice Bilgic et al.   PLoS One

Isolation and fine mapping of Rps6: an intermediate host resistance gene in barley to wheat stripe rust

(2016) Andrew M. Dawson et al.   THEORETICAL AND APPLIED GENETICS

De Novo Transcriptome Sequencing of Desert Herbaceous Achnatherum splendens (Achnatherum) Seedlings and Identification of Salt Tolerance Genes

(2016) Jiangtao Liu et al.   Genes

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

The Mediator complex: a central integrator of transcription

(2015) Benjamin L. Allen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Phenotypic and Genotypic Characterization of Race TKTTF of Puccinia graminis f. sp. tritici that Caused a Wheat Stem Rust Epidemic in Southern Ethiopia in 2013–14

(2015) Pablo Olivera et al.   PHYTOPATHOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

(2014) Shichen Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

The powdery mildew resistance genePm8derived from rye is suppressed by its wheat orthologPm3

(2014) Severine Hurni et al.   PLANT JOURNAL

Ancient hybridizations among the ancestral genomes of bread wheat

(2014) T. Marcussen et al.   SCIENCE

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Strategies for transferring resistance into wheat: from wide crosses to GM cassettes

(2014) Brande B. H. Wulff et al.   Frontiers in Plant Science

De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads

(2013) David Hernandez et al.   BIOINFORMATICS

Suppression of stripe rust and leaf rust resistances in interspecific crosses of wheat

(2013) Wanquan Chen et al.   EUPHYTICA

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Trait-directedde novopopulation transcriptome dissects genetic regulation of a balanced polymorphism in phosphorus nutrition/arsenate tolerance in a wild grass,Holcus lanatus

(2013) Caroline Meharg et al.   NEW PHYTOLOGIST

The Arabidopsis Mediator complex subunits MED14/SWP and MED16/SFR6/IEN1 differentially regulate defense gene expression in plant immune responses

(2013) Xudong Zhang et al.   PLANT JOURNAL

FISHIS: Fluorescence In Situ Hybridization in Suspension and Chromosome Flow Sorting Made Easy

(2013) Debora Giorgi et al.   PLoS One

Development and characterization of a compensating wheat-Thinopyrum intermedium Robertsonian translocation with Sr44 resistance to stem rust (Ug99)

(2013) Wenxuan Liu et al.   THEORETICAL AND APPLIED GENETICS

A Downy Mildew Effector Attenuates Salicylic Acid–Triggered Immunity in Arabidopsis by Interacting with the Host Mediator Complex

(2013) Marie-Cécile Caillaud et al.   PLOS BIOLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

MapDisto: fast and efficient computation of genetic linkage maps

(2012) Mathias Lorieux   MOLECULAR BREEDING

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

The Mediator subunit SFR6/MED16 controls defence gene expression mediated by salicylic acid and jasmonate responsive pathways

(2012) Deepthi L. Wathugala et al.   NEW PHYTOLOGIST

Non-Recognition-of-BTH4, anArabidopsisMediator Subunit Homolog, Is Necessary for Development and Response to Salicylic Acid

(2012) Juan Vicente Canet et al.   PLANT CELL

TheArabidopsisMediator Complex Subunit16 Positively Regulates Salicylate-Mediated Systemic Acquired Resistance and Jasmonate/Ethylene-Induced Defense Pathways

(2012) Xudong Zhang et al.   PLANT CELL

Races of Puccinia graminis f. sp. tritici with Combined Virulence to Sr13 and Sr9e in a Field Stem Rust Screening Nursery in Ethiopia

(2012) P. D. Olivera et al.   PLANT DISEASE

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

(2011) Eduard D Akhunov et al.   BMC GENOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.)

(2011) Alexandra M. Allen et al.   PLANT BIOTECHNOLOGY JOURNAL

The Mediator Complex in Plants: Structure, Phylogeny, and Expression Profiling of Representative Genes in a Dicot (Arabidopsis) and a Monocot (Rice) during Reproduction and Abiotic Stress

(2011) S. Mathur et al.   PLANT PHYSIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Genetics and mapping of seedling resistance to Ug99 stem rust in Canadian wheat cultivars ‘Peace’ and ‘AC Cadillac’

(2010) Colin W. Hiebert et al.   THEORETICAL AND APPLIED GENETICS

Complexity in Transcription Control at the Activation Domain-Mediator Interface

(2009) M. A. Balamotis et al.   Science Signaling

Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley

(2008) Hana Šimková et al.   BMC GENOMICS

De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer

(2008) D. Hernandez et al.   GENOME RESEARCH

Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex

(2008) Henri-Marc Bourbon   NUCLEIC ACIDS RESEARCH

Detection of Virulence to Resistance GeneSr24Within Race TTKS ofPuccinia graminisf. sp.tritici

(2008) Y. Jin et al.   PLANT DISEASE

Acc homoeoloci and the evolution of wheat genomes

(2008) D. Chalupska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA