Shifts in plant–microbe interactions over community succession and their effects on plant resistance to herbivores

Plant species richness elicits changes in the metabolome of grassland species via soil biotic legacy

(2019) Christian Ristok et al.   JOURNAL OF ECOLOGY

More Than “Push” and “Pull”? Plant-Soil Feedbacks of Maize Companion Cropping Increase Chemical Plant Defenses Against Herbivores

(2019) Daniel M. Mutyambai et al.   Frontiers in Ecology and Evolution

Acceleration or deceleration of litter decomposition by herbivory depends on nutrient availability through intraspecific differences in induced plant resistance traits

(2018) Karin T. Burghardt et al.   JOURNAL OF ECOLOGY

Eco-evolutionary processes affecting plant–herbivore interactions during early community succession

(2018) Mia M. Howard et al.   OECOLOGIA

The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome

(2018) M. A. Cregger et al.   Microbiome

Strong succession in arbuscular mycorrhizal fungal communities

(2018) Cheng Gao et al.   ISME Journal

Species-specific plant–soil feedbacks alter herbivore-induced gene expression and defense chemistry in Plantago lanceolata

(2018) Feng Zhu et al.   OECOLOGIA

Bacteria and Competing Herbivores Weaken Top–Down and Bottom–Up Aphid Suppression

(2018) Carmen K. Blubaugh et al.   Frontiers in Plant Science

Methods for normalizing microbiome data: an ecological perspective

(2018) Donald T. McKnight et al.   Methods in Ecology and Evolution

Soil microbial community composition in tallgrass prairie restorations converge with remnants across a 27-year chronosequence

(2017) Nicholas A. Barber et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

(2017) S Emilia Hannula et al.   ISME Journal

Plant community composition but not plant traits determine the outcome of soil legacy effects on plants and insects

(2017) Robin Heinen et al.   JOURNAL OF ECOLOGY

lmerTest Package: Tests in Linear Mixed Effects Models

(2017) Alexandra Kuznetsova et al.   Journal of Statistical Software

Soil microbial communities alter leaf chemistry and influence allelopathic potential among coexisting plant species

(2017) Scott J. Meiners et al.   OECOLOGIA

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

Effects of jasmonic acid signalling on the wheat microbiome differ between body sites

(2017) Hongwei Liu et al.   Scientific Reports

Plant communication in a widespread goldenrod: keeping herbivores on the move

(2016) Kimberly Morrell et al.   FUNCTIONAL ECOLOGY

Herbivore release drives parallel patterns of evolutionary divergence in invasive plant phenotypes

(2016) Akane Uesugi et al.   JOURNAL OF ECOLOGY

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Plants and endophytes: equal partners in secondary metabolite production?

(2015) Jutta Ludwig-Müller   BIOTECHNOLOGY LETTERS

Species-specific plant-soil feedback effects on above-ground plant-insect interactions

(2015) Martine Kos et al.   JOURNAL OF ECOLOGY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative

(2014) Maggie R. Wagner et al.   ECOLOGY LETTERS

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Terpene synthases are widely distributed in bacteria

(2014) Yuuki Yamada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inside the root microbiome: Bacterial root endophytes and plant growth promotion

(2013) Jonathan R. Gaiero et al.   AMERICAN JOURNAL OF BOTANY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior

(2013) Dayakar V. Badri et al.   NEW PHYTOLOGIST

Herbivore exclusion drives the evolution of plant competitiveness via increased allelopathy

(2013) Akane Uesugi et al.   NEW PHYTOLOGIST

A test of genotypic variation in specificity of herbivore-induced responses in Solidago altissima L. (Asteraceae)

(2013) Akane Uesugi et al.   OECOLOGIA

Herbivore damage-induced production and specific anti-digestive function of serine and cysteine protease inhibitors in tall goldenrod, Solidago altissima L. (Asteraceae)

(2013) Robert F. Bode et al.   PLANTA

Activation of the Jasmonic Acid Plant Defence Pathway Alters the Composition of Rhizosphere Bacterial Communities

(2013) Lilia C. Carvalhais et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Legacy effects of aboveground-belowground interactions

(2012) Olga Kostenko et al.   ECOLOGY LETTERS

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Rapid responses of soil microorganisms improve plant fitness in novel environments

(2012) J. A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Successional changes in plant resistance and tolerance to herbivory

(2011) Alyssa S. Hakes et al.   ECOLOGY

Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits

(2011) Jennifer A. Lau et al.   NEW PHYTOLOGIST

Reduction of rare soil microbes modifies plant-herbivore interactions

(2010) W. H. Gera Hol et al.   ECOLOGY LETTERS

Biogeographic synthesis of secondary succession rates in eastern North America

(2010) Justin P. Wright et al.   JOURNAL OF BIOGEOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

DNA barcoding of arbuscular mycorrhizal fungi

(2010) Herbert Stockinger et al.   NEW PHYTOLOGIST

Helping plants to deal with insects: the role of beneficial soil-borne microbes

(2010) Ana Pineda et al.   TRENDS IN PLANT SCIENCE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY