Chromosomal‐level assembly of Takifugu obscurus (Abe, 1949) genome using third‐generation DNA sequencing and Hi‐C analysis

Chromosome‐level genome assembly of Triplophysa tibetana , a fish adapted to the harsh high‐altitude environment of the Tibetan Plateau

(2019) Xuefen Yang et al.   Molecular Ecology Resources

The sequence and de novo assembly of Takifugu bimaculatus genome using PacBio and Hi-C technologies

(2019) Zhixiong Zhou et al.   Scientific Data

Chromosome genome assembly and annotation of the yellowbelly pufferfish with PacBio and Hi-C sequencing data

(2019) Yitao Zhou et al.   Scientific Data

Global conservation status of marine pufferfishes (Tetraodontiformes: Tetraodontidae)

(2018) Emilie Stump et al.   Global Ecology and Conservation

Finding Nemo’s Genes: A chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula

(2018) Robert Lehmann et al.   Molecular Ecology Resources

 Innate and adaptive immunity in teleost fish: a review

(2018) C. Uribe et al.   VETERINARNI MEDICINA

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

(2016) Nicholas H. Putnam et al.   GENOME RESEARCH

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

(2016) Shubha Vij et al.   PLoS Genetics

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates

(2015) Domitille Chalopin et al.   Genome Biology and Evolution

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Taxonomy and systematics of tetraodontiform fishes: a review focusing primarily on progress in the period from 1980 to 2014

(2014) Keiichi Matsuura   ICHTHYOLOGICAL RESEARCH

Tetrodotoxin: Chemistry, Toxicity, Source, Distribution and Detection

(2014) Vaishali Bane et al.   Toxins

Do habitat shifts drive diversification in teleost fishes? An example from the pufferfishes (Tetraodontidae)

(2013) F. Santini et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Integration of the Genetic Map and Genome Assembly of Fugu Facilitates Insights into Distinct Features of Genome Evolution in Teleosts and Mammals

(2011) Wataru Kai et al.   Genome Biology and Evolution

Rfam: Wikipedia, clans and the "decimal" release

(2010) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

Explosive Speciation of Takifugu: Another Use of Fugu as a Model System for Evolutionary Biology

(2008) Y. Yamanoue et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH