Linking stream microbial community functional genes to dissolved organic matter and inorganic nutrients

Isolation and characterization of an ammonium-oxidizing iron reducer: Acidimicrobiaceae sp. A6

(2018) Shan Huang et al.   PLoS One

Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes

(2018) Tom O. Delmont et al.   Nature Microbiology

Function and functional redundancy in microbial systems

(2018) Stilianos Louca et al.   Nature Ecology & Evolution

Land use controls stream ecosystem metabolism by shifting dissolved organic matter and nutrient regimes

(2017) Thomas Fuß et al.   FRESHWATER BIOLOGY

Kineothrix alysoides, gen. nov., sp. nov., a saccharolytic butyrate-producer within the family Lachnospiraceae

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Microbial Community Structure and Function Decoupling Across a Phosphorus Gradient in Streams

(2017) Erick S. LeBrun et al.   MICROBIAL ECOLOGY

The Effect of Increased Loads of Dissolved Organic Matter on Estuarine Microbial Community Composition and Function

(2017) Sachia J. Traving et al.   Frontiers in Microbiology

Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition

(2017) Jacob D. Hosen et al.   Frontiers in Microbiology

Agricultural constraints on microbial resource use and niche breadth in drainage ditches

(2017) Ellard R. Hunting et al.   PeerJ

Mechanistic Insights into the Reaction of Chlorination of Tryptophan Catalyzed by Tryptophan 7-Halogenase

(2017) Tatyana G. Karabencheva-Christova et al.   Scientific Reports

Modeling Allochthonous Dissolved Organic Carbon Mineralization Under Variable Hydrologic Regimes in Boreal Lakes

(2016) Dominic Vachon et al.   ECOSYSTEMS

Deciphering associations between dissolved organic molecules and bacterial communities in a pelagic marine system

(2016) Helena Osterholz et al.   ISME Journal

Shifts in diversity and function of lake bacterial communities upon glacier retreat

(2016) Hannes Peter et al.   ISME Journal

Lack of functional redundancy in the relationship between microbial diversity and ecosystem functioning

(2016) Manuel Delgado-Baquerizo et al.   JOURNAL OF ECOLOGY

IMG/M: integrated genome and metagenome comparative data analysis system

(2016) I-Min A. Chen et al.   NUCLEIC ACIDS RESEARCH

High taxonomic variability despite stable functional structure across microbial communities

(2016) Stilianos Louca et al.   Nature Ecology & Evolution

Characterizing dissolved organic matter fluorescence with parallel factor analysis: a tutorial

(2016) Colin A. Stedmon et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Linking dissolved carbon dioxide to dissolved organic matter quality in streams

(2015) Sarah C. D’Amario et al.   BIOGEOCHEMISTRY

Human activities cause distinct dissolved organic matter composition across freshwater ecosystems

(2015) Clayton J. Williams et al.   GLOBAL CHANGE BIOLOGY

The quality of organic matter shapes the functional biogeography of bacterioplankton across boreal freshwater ecosystems

(2015) Clara Ruiz-González et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilms

(2015) Linda Wilhelm et al.   ISME Journal

The extent of functional redundancy changes as species’ roles shift in different environments

(2015) Ingo Fetzer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stream microbial diversity in response to environmental changes: review and synthesis of existing research

(2015) Lydia H. Zeglin   Frontiers in Microbiology

Functional Gene Composition, Diversity and Redundancy in Microbial Stream Biofilm Communities

(2015) Andrew Dopheide et al.   PLoS One

Characterization of the microbial community in a lotic environment to assess the effect of pollution on nitrifying and potentially pathogenic bacteria

(2014) JD Medeiros et al.   BRAZILIAN JOURNAL OF BIOLOGY

Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping

(2014) Mengxin Zhao et al.   ISME Journal

Beyond best management practices: pelagic biogeochemical dynamics in urban stormwater ponds

(2013) Clayton J. Williams et al.   ECOLOGICAL APPLICATIONS

Microbial biodiversity in glacier-fed streams

(2013) Linda Wilhelm et al.   ISME Journal

Stream microbial ecology

(2013) Stuart Findlay   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Ecological strategies shape the insurance potential of biodiversity

(2013) Miguel G. Matias et al.   Frontiers in Microbiology

Links between metabolic plasticity and functional redundancy in freshwater bacterioplankton communities

(2013) Jérôme Comte et al.   Frontiers in Microbiology

Simultaneous consumption and production of fluorescent dissolved organic matter by lake bacterioplankton

(2012) François Guillemette et al.   ENVIRONMENTAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Newly Isolated and Characterized Bacteria with Great Application Potential for Decomposition of Lignocellulosic Biomass

(2012) Miranda L. Maki et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Phylogenetic perspectives of nitrogen-fixing actinobacteria

(2011) Maher Gtari et al.   ARCHIVES OF MICROBIOLOGY

Reconstructing the various facets of dissolved organic carbon bioavailability in freshwater ecosystems

(2011) François Guillemette et al.   LIMNOLOGY AND OCEANOGRAPHY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

(2011) J. Raes et al.   Molecular Systems Biology

Humic Acid-Oxidizing, Nitrate-Reducing Bacteria in Agricultural Soils

(2011) J. I. Van Trump et al.   mBio

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Linking the patterns of change in composition and function in bacterioplankton successions along environmental gradients

(2010) Jérôme Comte et al.   ECOLOGY

Inter-regional comparison of land-use effects on stream metabolism

(2010) MELODY J. BERNOT et al.   FRESHWATER BIOLOGY

Function-specific response to depletion of microbial diversity

(2010) Hannes Peter et al.   ISME Journal

Unraveling the role of land use and microbial activity in shaping dissolved organic matter characteristics in stream ecosystems

(2010) Clayton J. Williams et al.   LIMNOLOGY AND OCEANOGRAPHY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Ecosystem and Seasonal Control of Stream Dissolved Organic Carbon Along a Gradient of Land Use

(2008) Henry F. Wilson et al.   ECOSYSTEMS

Biophysical controls on organic carbon fluxes in fluvial networks

(2008) Tom J. Battin et al.   Nature Geoscience

Effects of agricultural land use on the composition of fluvial dissolved organic matter

(2008) Henry F. Wilson et al.   Nature Geoscience

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE

Microbial Biogeography: From Taxonomy to Traits

(2008) J. L. Green et al.   SCIENCE