Patterns of Genomic Divergence and Signals of Selection in Sympatric and Allopatric Northeastern Pacific and Sea of Cortez Populations of the Sargo (Anisotremus davidsonii) and Longjaw Mudsucker (Gillichthys mirabilis)

Co-occurrence of ecologically similar species of Hawaiian spiders reveals critical early phase of adaptive radiation

(2018) Darko D. Cotoras et al.   BMC EVOLUTIONARY BIOLOGY

Multilocus molecular systematics of the circumtropical reef-fish genus Abudefduf (Pomacentridae): history, geography and ecology of speciation

(2018) Matthew A. Campbell et al.   PeerJ

Genomic signatures of rapid adaptive evolution in the bluespotted cornetfish, a Mediterranean Lessepsian invader

(2016) Giacomo Bernardi et al.   MOLECULAR ECOLOGY

The application of genomics to inform conservation of a functionally important reef fish (Scarus niger) in the Philippines

(2015) Brian L. Stockwell et al.   CONSERVATION GENETICS

Genomic signatures of geographic isolation and natural selection in coral reef fishes

(2015) Michelle R. Gaither et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)

(2015) Carly F. Graham et al.   Molecular Ecology Resources

The evolutionary history of the embiotocid surfperch radiation based on genome-wide RAD sequence data

(2015) Gary Longo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The effects of a tidal-mixing front on the distribution of larval fish habitats in a semi-enclosed sea during winter

(2014) Emilio A. Inda-Díaz et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

GENETIC ISOLATION BY ENVIRONMENT OR DISTANCE: WHICH PATTERN OF GENE FLOW IS MOST COMMON?

(2013) Jason P. Sexton et al.   EVOLUTION

Speciation in fishes

(2013) Giacomo Bernardi   MOLECULAR ECOLOGY

Pervasive selection or is it…? why areFSToutliers sometimes so frequent?

(2013) Nicolas Bierne et al.   MOLECULAR ECOLOGY

Combined analyses of kinship andFSTsuggest potential drivers of chaotic genetic patchiness in high gene-flow populations

(2013) Matthew Iacchei et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

SNP development from RNA-seq data in a nonmodel fish: how many individuals are needed for accurate allele frequency prediction?

(2013) C. Schunter et al.   Molecular Ecology Resources

The origins of tropical marine biodiversity

(2013) Brian W. Bowen et al.   TRENDS IN ECOLOGY & EVOLUTION

Molecular phylogeny of grunts (Teleostei, Haemulidae), with an emphasis on the ecology, evolution, and speciation history of New World species

(2012) José Tavera et al.   BMC EVOLUTIONARY BIOLOGY

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The Delta Mudsucker, Gillichthys detrusus, a Valid Species (Teleostei: Gobiidae) Endemic to the Colorado River Delta, Northernmost Gulf of California, Mexico

(2011) Camm C Swift et al.   COPEIA

A realignment of marine biogeographic provinces with particular reference to fish distributions

(2011) John C. Briggs et al.   JOURNAL OF BIOGEOGRAPHY

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

The complex analytical landscape of gene flow inference

(2011) Peter B. Marko et al.   TRENDS IN ECOLOGY & EVOLUTION

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Adaptive Radiation, Ecological Opportunity, and Evolutionary Determinism

(2010) Jonathan B. Losos   AMERICAN NATURALIST

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Phylogeography of the diamond turbot (Hypsopsetta guttulata) across the Baja California Peninsula

(2009) Jeffrey N. Schinske et al.   MARINE BIOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Speciation in coral-reef fishes

(2008) L. A. Rocha et al.   JOURNAL OF FISH BIOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One