Comparative transcriptome analysis of wild and lab populations of Astyanax mexicanus uncovers differential effects of environment and morphotype on gene expression

Evolution Shapes the Gene Expression Response to Oxidative Stress

(2019) Rima Siauciunaite et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Evolution of acoustic communication in blind cavefish

(2019) Carole Hyacinthe et al.   Nature Communications

Early adipogenesis contributes to excess fat accumulation in cave populations of Astyanax mexicanus

(2018) Shaolei Xiong et al.   DEVELOPMENTAL BIOLOGY

Comparative transcriptome analysis of field- and chamber-grown samples of Colobanthus quitensis (Kunth) Bartl, an Antarctic flowering plant

(2018) Sung Mi Cho et al.   Scientific Reports

Insulin resistance in cavefish as an adaptation to a nutrient-limited environment

(2018) Misty R. Riddle et al.   NATURE

Nonrandom RNAseq gene expression associated with RNAlater and flash freezing storage methods

(2018) Courtney N. Passow et al.   Molecular Ecology Resources

A comparative and evolutionary approach to oxidative stress in fish: A review

(2017) Kim Birnie-Gauvin et al.   FISH AND FISHERIES

Regulation of gene expression is associated with tolerance of the Arctic copepod Calanus glacialis to CO2 -acidified sea water

(2017) Allison Bailey et al.   Ecology and Evolution

The Liver in the Eyes of a Chronobiologist

(2016) Ziv Zwighaft et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Metabolism of ketone bodies during exercise and training: physiological basis for exogenous supplementation

(2016) Mark Evans et al.   JOURNAL OF PHYSIOLOGY-LONDON

Down syndrome cell adhesion molecule 1: testing for a role in insect immunity, behaviour and reproduction

(2016) Robert Peuß et al.   Royal Society Open Science

Characterization of glutathione-S-transferases in zebrafish (Danio rerio)

(2015) Branka Glisic et al.   AQUATIC TOXICOLOGY

Melanocortin 4 receptor mutations contribute to the adaptation of cavefish to nutrient-poor conditions

(2015) Ariel C. Aspiras et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thioredoxin Reductase 2 (TXNRD2) Mutation Associated With Familial Glucocorticoid Deficiency (FGD)

(2014) Rathi Prasad et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

Sequencing depth and coverage: key considerations in genomic analyses

(2014) David Sims et al.   NATURE REVIEWS GENETICS

Eyeless Mexican Cavefish Save Energy by Eliminating the Circadian Rhythm in Metabolism

(2014) Damian Moran et al.   PLoS One

Circadian timekeeping and output mechanisms in animals

(2013) Paul E Hardin et al.   CURRENT OPINION IN NEUROBIOLOGY

An Integrated Transcriptome-Wide Analysis of Cave and Surface Dwelling Astyanax mexicanus

(2013) Joshua B. Gross et al.   PLoS One

De Novo Sequencing of Astyanax mexicanus Surface Fish and Pachón Cavefish Transcriptomes Reveals Enrichment of Mutations in Cavefish Putative Eye Genes

(2013) Hélène Hinaux et al.   PLoS One

Circadian rhythms in Mexican blind cavefish Astyanax mexicanus in the lab and in the field

(2013) Andrew Beale et al.   Nature Communications

Differences in chemosensory response between eyed and eyeless Astyanax mexicanus of the Rio Subterráneo cave

(2013) Jonathan Bibliowicz et al.   EvoDevo

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Gene flow and population structure in the Mexican blind cavefish complex (Astyanax mexicanus)

(2012) Martina Bradic et al.   BMC EVOLUTIONARY BIOLOGY

Structural and functional diversity of the lectin repertoire in teleost fish: Relevance to innate and adaptive immunity

(2011) Gerardo R. Vasta et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

The REV-ERBs and RORs: molecular links between circadian rhythms and lipid homeostasis

(2011) Laura A Solt et al.   Future Medicinal Chemistry

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression

(2009) Christopher Vollmers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA