Insight into the Role of Epigenetic Processes in Abiotic and Biotic Stress Response in Wheat and Barley

Diversifying the structure of zinc finger nucleases for high-precision genome editing

(2019) David E. Paschon et al.   Nature Communications

Non-coding RNAs and transposable elements in plant genomes: emergence, regulatory mechanisms and roles in plant development and stress responses

(2019) Jinna Hou et al.   PLANTA

Enhancing gene editing specificity by attenuating DNA cleavage kinetics

(2019) Jeffrey C. Miller et al.   NATURE BIOTECHNOLOGY

Transcriptional network regulation of the brassinosteroid signaling pathway by the BES1–TPL–HDA19 co-repressor complex

(2019) Hyemin Kim et al.   PLANTA

Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation in Arabidopsis

(2019) Wen-Feng Nie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RdDM-independent de novo and heterochromatin DNA methylation by plant CMT and DNMT3 orthologs

(2019) Rafael Yaari et al.   Nature Communications

MicroRNA-guided regulation of heat stress response in wheat

(2019) Sridhar Ravichandran et al.   BMC GENOMICS

Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana

(2019) Mengshi Wu et al.   BMC GENOMICS

Lead, Cadmium and Zinc Phytotoxicity Alter DNA Methylation Levels to Confer Heavy Metal Tolerance in Wheat

(2019) Sarfraz Shafiq et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

CRISPR-Cas9 system: A new-fangled dawn in gene editing

(2019) Darshana Gupta et al.   LIFE SCIENCES

A Role for PICKLE in the Regulation of Cold and Salt Stress Tolerance in Arabidopsis

(2019) Rong Yang et al.   Frontiers in Plant Science

Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots

(2019) Rui Chen et al.   BMC GENOMICS

Barley long non-coding RNAs (lncRNA) responsive to excess boron

(2019) Turgay Unver et al.   GENOMICS

Combined Effect of Cadmium and Lead on Durum Wheat

(2019) Alessio Aprile et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transplacental Gene Delivery (TPGD) as a Noninvasive Tool for Fetal Gene Manipulation in Mice

(2019) Nakamura et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide Profiling of Histone Lysine Butyrylation Reveals its Role in the Positive Regulation of Gene Transcription in Rice

(2019) Shuai Liu et al.   Rice

A Microbial Fermentation Mixture Primes for Resistance Against Powdery Mildew in Wheat

(2019) Tony Twamley et al.   Frontiers in Plant Science

Identification, Evolution, and Expression Profiling of Histone Lysine Methylation Moderators in Brassica rapa

(2019) Gaofeng Liu et al.   Plants-Basel

Epigenetic regulation in plant abiotic stress responses

(2019) Ya‐Nan Chang et al.   Journal of Integrative Plant Biology

Effector gene silencing mediated by histone methylation underpins host adaptation in an oomycete plant pathogen

(2019) Liyuan Wang et al.   NUCLEIC ACIDS RESEARCH

To Be or Not To Be Pathogenic: Transcriptional Reprogramming Dictates a Fungal Pathogen’s Response to Different Hosts

(2019) Saima Shahid   PLANT CELL

SWI3B and HDA6 interact and are required for transposon silencing in Arabidopsis

(2019) Jie Yang et al.   PLANT JOURNAL

DNA Methylation: Toward Crop Disease Resistance Improvement

(2019) Soodeh Tirnaz et al.   TRENDS IN PLANT SCIENCE

Integration of Abscisic Acid Signaling with Other Signaling Pathways in Plant Stress Responses and Development

(2019) Manu Kumar et al.   Plants-Basel

Regulation Mechanism of Long Non-coding RNA in Plant Response to Stress

(2018) Xi Sun et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Understanding the evolutionary potential of epigenetic variation: a comparison of heritable phenotypic variation in epiRILs, RILs, and natural ecotypes of Arabidopsis thaliana

(2018) Yuan-Ye Zhang et al.   HEREDITY

Chromatin-based mechanisms of temperature memory in plants

(2018) Thomas Friedrich et al.   PLANT CELL AND ENVIRONMENT

Cadmium phytoremediation potential of Brassica crop species: A review

(2018) Muhammad Rizwan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Modulation of nucleosomal DNA accessibility via charge-altering post-translational modifications in histone core

(2018) Andrew T. Fenley et al.   Epigenetics & Chromatin

Plant Small Non-coding RNAs and Their Roles in Biotic Stresses

(2018) Eleanor J. Brant et al.   Frontiers in Plant Science

Identification of microRNAs in response to aluminum stress in the roots of Tibetan wild barley and cultivated barley

(2018) Liyuan Wu et al.   BMC GENOMICS

Wheat WD40-repeat protein TaHOS15 functions in a histone deacetylase complex to fine-tune defense response to Blumeriagraminis f.sp. tritici

(2018) Jiao Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

DNA methylation dynamics during the interaction of wheat progenitor Aegilops tauschii with the obligate biotrophic fungus Blumeria graminis f. sp. tritici

(2018) Shuaifeng Geng et al.   NEW PHYTOLOGIST

Salinity and crop yield

(2018) C. Zörb et al.   PLANT BIOLOGY

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

Plant Hormone Signaling Crosstalks between Biotic and Abiotic Stress Responses

(2018) Yee-Shan Ku et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Wheat CHD3 protein TaCHR729 regulates the cuticular wax biosynthesis required for stimulating germination of Blumeria graminis f.sp. tritici

(2018) Xiaoyu Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

H3K4/K9 acetylation and Lr28-mediated expression of six leaf rust responsive genes in wheat (Triticum aestivum)

(2018) Chanchal Sharma et al.   MOLECULAR GENETICS AND GENOMICS

Effects of boron, silicon and their interactions on cadmium accumulation and toxicity in rice plants

(2018) Dongmei Chen et al.   JOURNAL OF HAZARDOUS MATERIALS

A review of wheat diseases-a field perspective

(2017) Melania Figueroa et al.   MOLECULAR PLANT PATHOLOGY

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis

(2017) Jun Xiao et al.   NATURE GENETICS

Exploiting induced and natural epigenetic variation for crop improvement

(2017) Nathan M. Springer et al.   NATURE REVIEWS GENETICS

DNA METHYLTRANSFERASE1 -mediated shoot regeneration is regulated by cytokinin-induced cell cycle in Arabidopsis

(2017) Hui Liu et al.   NEW PHYTOLOGIST

The Arabidopsis Chromatin-Remodeling Factor CHR5 Regulates Plant Immune Responses and Nucleosome Occupancy

(2017) Baohong Zou et al.   PLANT AND CELL PHYSIOLOGY

The Long-Noncoding RNA ELENA1 Functions in Plant Immunity

(2017) Jennifer Mach   PLANT CELL

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication

(2017) Raz Avni et al.   SCIENCE

RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats

(2017) Halise Busra Cagirici et al.   Scientific Reports

Survey of High Throughput RNA-Seq Data Reveals Potential Roles for lncRNAs during Development and Stress Response in Bread Wheat

(2017) Shumayla et al.   Frontiers in Plant Science

Non-coding RNAs and Their Roles in Stress Response in Plants

(2017) Jingjing Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

DNA Methylation and Demethylation in Plant Immunity

(2016) A. Deleris et al.   Annual Review of Phytopathology

A new allele for aluminium tolerance gene in barley (Hordeum vulgare L.)

(2016) Yanling Ma et al.   BMC GENOMICS

Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

(2016) Yadong Huang et al.   BMC GENOMICS

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

Unique features of long non-coding RNA biogenesis and function

(2016) Jeffrey J. Quinn et al.   NATURE REVIEWS GENETICS

Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression

(2016) Rafal Archacki et al.   NUCLEIC ACIDS RESEARCH

HD2C histone deacetylase and a SWI/SNF chromatin remodelling complex interact and both are involved in mediating the heat stress response inArabidopsis

(2016) Daniel Buszewicz et al.   PLANT CELL AND ENVIRONMENT

DNA demethylation is initiated in the central cells ofArabidopsisand rice

(2016) Kyunghyuk Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Insights on Plant Salt Tolerance Mechanisms and Their Potential Use for Breeding

(2016) Moez Hanin et al.   Frontiers in Plant Science

Heat Priming Induces Trans-generational Tolerance to High Temperature Stress in Wheat

(2016) Xiao Wang et al.   Frontiers in Plant Science

Genome-wide analysis of long intergenic non-coding RNAs in chickpea and their potential role in flower development

(2016) Niraj Khemka et al.   Scientific Reports

The roles of cross-talk epigenetic patterns inArabidopsis thaliana

(2015) Jingjing Wang et al.   Briefings in Functional Genomics

Evolution of the Grain Dispersal System in Barley

(2015) Mohammad Pourkheirandish et al.   CELL

RNA-directed DNA methylation in plants

(2015) Ali Movahedi et al.   PLANT CELL REPORTS

Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis

(2015) Zhaorong Hu et al.   PLANT JOURNAL

Roles and activities of chromatin remodeling ATPases in plants

(2015) Soon-Ki Han et al.   PLANT JOURNAL

The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs

(2015) Andreas Hecker et al.   PLANT PHYSIOLOGY

Genome-wide identification and expression characterization of ABCC-MRP transporters in hexaploid wheat

(2015) Kaushal K. Bhati et al.   Frontiers in Plant Science

Halophyte agriculture: Success stories

(2014) Suresh Panta et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Noncoding Transcription by Alternative RNA Polymerases Dynamically Regulates an Auxin-Driven Chromatin Loop

(2014) Federico Ariel et al.   MOLECULAR CELL

Functional Consequences of Splicing of the Antisense Transcript COOLAIR on FLC Transcription

(2014) Sebastian Marquardt et al.   MOLECULAR CELL

SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

(2014) Lianna M. Johnson et al.   NATURE

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Histone core modifications regulating nucleosome structure and dynamics

(2014) Peter Tessarz et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Induced and Constitutive DNA Methylation in a Salinity-Tolerant Wheat Introgression Line

(2014) Meng Wang et al.   PLANT AND CELL PHYSIOLOGY

ATP-Dependent Binding Cassette Transporter G Family Member 16 Increases Plant Tolerance to Abscisic Acid and Assists in Basal Resistance against Pseudomonas syringae DC3000

(2014) H. Ji et al.   PLANT PHYSIOLOGY

AntisenseCOOLAIRmediates the coordinated switching of chromatin states atFLCduring vernalization

(2014) Tibor Csorba et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The barley MATE gene, HvAACT1, increases citrate efflux and Al3+ tolerance when expressed in wheat and barley

(2013) Gaofeng Zhou et al.   ANNALS OF BOTANY

The study of a barley epigenetic regulator, HvDME, in seed development and under drought

(2013) Aliki Kapazoglou et al.   BMC PLANT BIOLOGY

Mechanisms and Functions of ATP-Dependent Chromatin-Remodeling Enzymes

(2013) Geeta J. Narlikar et al.   CELL

Widespread, abundant, and diverse TE-associated siRNAs in developing wheat grain

(2013) Fenglong Sun et al.   GENE

Role of chromatin in water stress responses in plants

(2013) Soon-Ki Han et al.   JOURNAL OF EXPERIMENTAL BOTANY

Long non-coding genes implicated in response to stripe rust pathogen stress in wheat (Triticum aestivum L.)

(2013) Hong Zhang et al.   MOLECULAR BIOLOGY REPORTS

The RdDM Pathway Is Required for Basal Heat Tolerance in Arabidopsis

(2013) Olga V. Popova et al.   Molecular Plant

Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action

(2013) P. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetics and Phosphoproteomics Reveal a Protein Phosphorylation Network in the Abscisic Acid Signaling Pathway in Arabidopsis thaliana

(2013) T. Umezawa et al.   Science Signaling

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

(2012) Xin Li et al.   BMC GENOMICS

The role of long non-coding RNA in transcriptional gene silencing

(2012) Andrzej T Wierzbicki   CURRENT OPINION IN PLANT BIOLOGY

Histone Lysine Methylation Dynamics: Establishment, Regulation, and Biological Impact

(2012) Joshua C. Black et al.   MOLECULAR CELL

A physical, genetic and functional sequence assembly of the barley genome

(2012)   NATURE

The Progeny of Arabidopsis thaliana Plants Exposed to Salt Exhibit Changes in DNA Methylation, Histone Modifications and Gene Expression

(2012) Andriy Bilichak et al.   PLoS One

SET domain proteins in plant development

(2011) Tage Thorstensen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Chromatin modifications and remodeling in plant abiotic stress responses

(2011) Ming Luo et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

ABA signal transduction at the crossroad of biotic and abiotic stress responses

(2011) SUNG CHUL LEE et al.   PLANT CELL AND ENVIRONMENT

The phytochelatin transporters AtABCC1 and AtABCC2 mediate tolerance to cadmium and mercury

(2011) Jiyoung Park et al.   PLANT JOURNAL

Long noncoding RNA: unveiling hidden layer of gene regulatory networks

(2011) Eun-Deok Kim et al.   TRENDS IN PLANT SCIENCE

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response

(2010) Michal Jaskiewicz et al.   EMBO REPORTS

DNA cytosine methylation in plant development

(2010) Meishan Zhang et al.   Journal of Genetics and Genomics

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

An update on the ABCC transporter family in plants: many genes, many proteins, but how many functions?

(2010) D. Wanke et al.   PLANT BIOLOGY

Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression

(2010) Junli Zhou et al.   PLANT MOLECULAR BIOLOGY

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

Active DNA Demethylation Mediated by DNA Glycosylases

(2009) Jian-Kang Zhu   Annual Review of Genetics

Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes

(2009) J. Reinders et al.   GENES & DEVELOPMENT

TheArabidopsisATP-binding Cassette Protein AtMRP5/AtABCC5 Is a High Affinity Inositol Hexakisphosphate Transporter Involved in Guard Cell Signaling and Phytate Storage

(2009) Réka Nagy et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

DNA demethylation by DNA repair

(2009) Mary Gehring et al.   TRENDS IN GENETICS

Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits

(2009) Frank Johannes et al.   PLoS Genetics

Alterations of Lysine Modifications on the Histone H3 N-Tail under Drought Stress Conditions in Arabidopsis thaliana

(2008) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

HAB1-SWI3B Interaction Reveals a Link between Abscisic Acid Signaling and Putative SWI/SNF Chromatin-Remodeling Complexes in Arabidopsis

(2008) A. Saez et al.   PLANT CELL

Genetic Identification of a Network of Factors that Functionally Interact with the Nucleosome Remodeling ATPase ISWI

(2008) Giosalba Burgio et al.   PLoS Genetics