Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana

Plant Cell Wall Dynamics in Compatible and Incompatible Potato Response to Infection Caused by Potato Virus Y (PVYNTN)

(2018) Katarzyna Otulak-Kozieł et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A virus-targeted plant receptor-like kinase promotes cell-to-cell spread of RNAi

(2018) Tabata Rosas-Diaz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular dissection of distinct symptoms induced by tomato chlorosis virus and tomato yellow leaf curl virus based on comparative transcriptome analysis

(2018) Jang-Kyun Seo et al.   VIROLOGY

Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus

(2018) Ke Li et al.   Virology Journal

Dynamic Virus-Dependent Subnuclear Localization of the Capsid Protein from a Geminivirus

(2017) Liping Wang et al.   Frontiers in Plant Science

Chlorophyll fluorescence lifetime imaging provides new insight into the chlorosis induced by plant virus infection

(2016) Rong Lei et al.   PLANT CELL REPORTS

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Virus tolerance and recovery from viral induced-symptoms in plants are associated with transcriptome reprograming

(2015) Louis Bengyella et al.   PLANT MOLECULAR BIOLOGY

Resistance gene analogs involved in tolerant cassava–geminivirus interaction that shows a recovery phenotype

(2015) Bengyella Louis et al.   VIRUS GENES

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Transcriptional analysis of South African cassava mosaic virus-infected susceptible and tolerant landraces of cassava highlights differences in resistance, basal defense and cell wall associated genes during infection

(2014) Farhahna Allie et al.   BMC GENOMICS

Suppression of cell wall-related genes associated with stunting of Oryza glaberrima infected with Rice tungro spherical virus

(2014) Bernard O. Budot et al.   Frontiers in Microbiology

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

Assessing Global Transcriptome Changes in Response to South African Cassava Mosaic Virus [ZA-99] Infection in Susceptible Arabidopsis thaliana

(2013) Erica J. Pierce et al.   PLoS One

Comparative Transcriptome Profiling of a Resistant vs. Susceptible Tomato (Solanum lycopersicum) Cultivar in Response to Infection by Tomato Yellow Leaf Curl Virus

(2013) Tianzi Chen et al.   PLoS One

Suppression of terpenoid synthesis in plants by a virus promotes its mutualism with vectors

(2012) Jun-Bo Luan et al.   ECOLOGY LETTERS

A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research

(2012) Aureliano Bombarely et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Transcriptome analysis of symptomatic and recovered leaves of geminivirus-infected pepper (Capsicum annuum)

(2012) Elsa Góngora-Castillo et al.   Virology Journal

Photosynthetic alterations of pea leaves infected systemically by pea enation mosaic virus: A coordinated decrease in efficiencies of CO2 assimilation and photosystem II photochemistry

(2011) Helena Kyseláková et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Identification of Host Genes Involved in Geminivirus Infection Using a Reverse Genetics Approach

(2011) Rosa Lozano-Durán et al.   PLoS One

Differential expression analyses of host genes involved in systemic infection of Tomato leaf curl New Delhi virus (ToLCNDV)

(2011) Afsar Raza Naqvi et al.   VIRUS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Global Analysis of Arabidopsis Gene Expression Uncovers a Complex Array of Changes Impacting Pathogen Response and Cell Cycle during Geminivirus Infection

(2008) J. T. Ascencio-Ibanez et al.   PLANT PHYSIOLOGY