A systematic evaluation of normalization methods in quantitative label-free proteomics

Liver lipid metabolism is altered by increased circulating estrogen to androgen ratio in male mouse

(2016) Anni P. Vehmas et al.   Journal of Proteomics

DeMix-Q: Quantification-Centered Data Processing Workflow

(2016) Bo Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Optimization of Statistical Methods Impact on Quantitative Proteomics Data

(2015) Anna Pursiheimo et al.   JOURNAL OF PROTEOME RESEARCH

Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues

(2015) Roland Bruderer et al.   MOLECULAR & CELLULAR PROTEOMICS

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

(2014) Aakash Chawade et al.   JOURNAL OF PROTEOME RESEARCH

Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

(2014) Aakash Chawade et al.   JOURNAL OF PROTEOME RESEARCH

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative shotgun proteomics: considerations for a high-quality workflow in immunology

(2014) Felix Meissner et al.   NATURE IMMUNOLOGY

Metabolomics Data Normalization with EigenMS

(2014) Yuliya V. Karpievitch et al.   PLoS One

Label-free quantification in clinical proteomics

(2013) Dominik A. Megger et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Normalization and missing value imputation for label-free LC-MS analysis

(2012) Yuliya V Karpievitch et al.   BMC BIOINFORMATICS

A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors

(2011) Bobbie-Jo M. Webb-Robertson et al.   PROTEOMICS

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

(2009) Yuliya V. Karpievitch et al.   BIOINFORMATICS

Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography−Tandem Mass Spectrometry

(2009) David L. Tabb et al.   JOURNAL OF PROTEOME RESEARCH

Development and Evaluation of Normalization Methods for Label-free Relative Quantification of Endogenous Peptides

(2009) Kim Kultima et al.   MOLECULAR & CELLULAR PROTEOMICS

Reproducibility-Optimized Test Statistic for Ranking Genes in Microarray Studies

(2008) L.L. Elo et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics