Full-length transcriptome sequencing reveals the low-temperature-tolerance mechanism of Medicago falcata roots

Full-length transcriptome sequences of ephemeral plant Arabidopsis pumila provides insight into gene expression dynamics during continuous salt stress

(2018) Lifei Yang et al.   BMC GENOMICS

Identification of cold-related miRNAs in sugarcane by small RNA sequencing and functional analysis of a cold inducible ScmiR393 to cold stress

(2018) Yuting Yang et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Analysis of transcripts and splice isoforms in red clover (Trifolium pratense L.) by single-molecule long-read sequencing

(2018) Yuehui Chao et al.   BMC PLANT BIOLOGY

Sequence diversity of five Medicago sativa genes involved in agronomic traits to set up allele mining in breeding

(2018) Camille Gréard et al.   MOLECULAR BREEDING

Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome

(2017) Tianying Lan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances in physiological and molecular aspects of plant cold tolerance

(2017) Hail Z. Rihan et al.   Journal of Plant Interactions

Dual impact of elevated temperature on plant defence and bacterial virulence in Arabidopsis

(2017) Bethany Huot et al.   Nature Communications

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

Overexpression of the Medicago falcata NAC transcription factor MfNAC3 enhances cold tolerance in Medicago truncatula

(2016) Yueting Qu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Altered amino acid profile of arbuscular mycorrhizal maize plants under low temperature stress

(2016) Xiancan Zhu et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Reduced light and moderate water deficiency sustain nitrogen assimilation and sucrose degradation at low temperature in durum wheat

(2016) Imre Majláth et al.   JOURNAL OF PLANT PHYSIOLOGY

Overexpression of a novel NAC-type tomato transcription factor, SlNAM1 , enhances the chilling stress tolerance of transgenic tobacco

(2016) Xiao-Dong Li et al.   JOURNAL OF PLANT PHYSIOLOGY

Comparative photosynthetic and metabolic analyses reveal mechanism of improved cold stress tolerance in bermudagrass by exogenous melatonin

(2016) Zhengrong Hu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Effects of acclimation and pretreatment with abscisic acid or salicylic acid on tolerance of Trigonobalanus doichangensis to extreme temperatures

(2015) Y. L. Zheng et al.   BIOLOGIA PLANTARUM

De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

(2015) Zhenyan Miao et al.   BMC GENOMICS

A comparison of the low temperature transcriptomes of two tomato genotypes that differ in freezing tolerance: Solanum lycopersicum and Solanum habrochaites

(2015) Hongyu Chen et al.   BMC PLANT BIOLOGY

COLD1 Confers Chilling Tolerance in Rice

(2015) Yun Ma et al.   CELL

Transcriptional networks — crops, clocks, and abiotic stress

(2015) Malia A Gehan et al.   CURRENT OPINION IN PLANT BIOLOGY

Sodium extrusion associated with enhanced expression of SOS1 underlies different salt tolerance between Medicago falcata and Medicago truncatula seedlings

(2015) Min Liu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum

(2015) Robert VanBuren et al.   NATURE

Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues ofSalvia miltiorrhizaand tanshinone biosynthesis

(2015) Zhichao Xu et al.   PLANT JOURNAL

Endocytosis and its regulation in plants

(2015) Lusheng Fan et al.   TRENDS IN PLANT SCIENCE

The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development

(2014) Xiao Chen et al.   CELL

Cold acclimation, de-acclimation and re-acclimation of spring canola, winter canola and winter wheat: The role of carbohydrates, cold-induced stress proteins and vernalization

(2014) Russell G. Trischuk et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Comparative transcriptome analysis of RNA-seq data for cold-tolerant and cold-sensitive rice genotypes under cold stress

(2014) Chunxiu Shen et al.   JOURNAL OF PLANT BIOLOGY

Resolving the complexity of the human genome using single-molecule sequencing

(2014) Mark J. P. Chaisson et al.   NATURE

Cold Signal Transduction and its Interplay with Phytohormones During Cold Acclimation

(2014) Yiting Shi et al.   PLANT AND CELL PHYSIOLOGY

Transcriptome profiling of Vitis amurensis, an extremely cold-tolerant Chinese wild Vitis species, reveals candidate genes and events that potentially connected to cold stress

(2014) Weirong Xu et al.   PLANT MOLECULAR BIOLOGY

Cold stress signaling networks in Arabidopsis

(2013) Jin Jeon et al.   JOURNAL OF PLANT BIOLOGY

Hv-CBF2A overexpression in barley accelerates COR gene transcript accumulation and acquisition of freezing tolerance during cold acclimation

(2013) Zoran Jeknić et al.   PLANT MOLECULAR BIOLOGY

Induction of DREB2A pathway with repression of E2F, jasmonic acid biosynthetic and photosynthesis pathways in cold acclimation-specific freeze-resistant wheat crown

(2012) Amrit Karki et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Physiological and molecular changes in plants grown at low temperatures

(2012) Andreas Theocharis et al.   PLANTA

Comparative Transcriptome Profiling of Chilling Stress Responsiveness in Two Contrasting Rice Genotypes

(2012) Ting Zhang et al.   PLoS One

Characterization of two novel cold-inducible K3 dehydrin genes from alfalfa (Medicago sativa spp. sativa L.)

(2012) Marie-Pier Dubé et al.   THEORETICAL AND APPLIED GENETICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Comparative studies on tolerance of Medicago truncatula and Medicago falcata to freezing

(2011) Li-Li Zhang et al.   PLANTA

CBF-dependent signaling pathway: A key responder to low temperature stress in plants

(2010) M.Q. Zhou et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Weighted Gene Coexpression Network Analysis: State of the Art

(2010) Wei Zhao et al.   Journal of Biopharmaceutical Statistics

Inside the CBF locus in Poaceae

(2010) Alessandro Tondelli et al.   PLANT SCIENCE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Cold stress and acclimation - what is important for metabolic adjustment?

(2009) A. Janská et al.   PLANT BIOLOGY

Regulation of endocytosis by external stimuli in plant cells

(2009) N. Leborgne‐Castel et al.   PLANT BIOSYSTEMS

Analysis of antioxidant enzyme activity during germination of alfalfa under salt and drought stresses

(2009) Wen-Bin Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Phenylalanine ammonia lyase functions as a switch directly controlling the accumulation of calycosin and calycosin-7-O- -D-glucoside in Astragalus membranaceus var. mongholicus plants

(2008) H. Pan et al.   JOURNAL OF EXPERIMENTAL BOTANY