An improved bind-n-seq strategy to determine protein-DNA interactions validated using the bacterial transcriptional regulator YipR

Evaluation of alkylating pyrrole-imidazole polyamide conjugates by a novel method for high-throughput sequencer

(2018) Gengo Kashiwazaki et al.   BIOORGANIC & MEDICINAL CHEMISTRY

RNA-binding specificity landscape of the pentatricopeptide repeat protein PPR10

(2017) Rafael G. Miranda et al.   RNA

Regulation of Metabolic Pathways by MarR Family Transcription Factors

(2017) Anne Grove   Computational and Structural Biotechnology Journal

A Comparison Study for DNA Motif Modeling on Protein Binding Microarray

(2016) Ka-Chun Wong et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The application of yeast hybrid systems in protein interaction analysis

(2016) Z.-X. Zhu et al.   MOLECULAR BIOLOGY

Quantification of transcription factor-DNA binding affinity in a living cell

(2015) Sergey Belikov et al.   NUCLEIC ACIDS RESEARCH

RNA Bind-n-Seq: Quantitative Assessment of the Sequence and Structural Binding Specificity of RNA Binding Proteins

(2014) Nicole Lambert et al.   MOLECULAR CELL

Miz-1 Activates Gene Expression via a Novel Consensus DNA Binding Motif

(2014) Bonnie L. Barrilleaux et al.   PLoS One

Transcription factors: specific DNA binding and specific gene regulation

(2014) Anne-Laure Todeschini et al.   TRENDS IN GENETICS

Novel Cyclic di-GMP Effectors of the YajQ Protein Family Control Bacterial Virulence

(2014) Shi-qi An et al.   PLoS Pathogens

ChIP-seq: Using high-throughput sequencing to discover protein–DNA interactions

(2009) Dominic Schmidt et al.   METHODS

ChIP–seq: advantages and challenges of a maturing technology

(2009) Peter J. Park   NATURE REVIEWS GENETICS

Bind-n-Seq: high-throughput analysis of in vitro protein–DNA interactions using massively parallel sequencing

(2009) Artem Zykovich et al.   NUCLEIC ACIDS RESEARCH

The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants

(2008) Lisa C Crossman et al.   GENOME BIOLOGY