Effects of sample age on data quality from targeted sequencing of museum specimens: what are we capturing in time?
出版年份 2020 全文链接
标题
Effects of sample age on data quality from targeted sequencing of museum specimens: what are we capturing in time?
作者
关键词
-
出版物
BMC GENOMICS
Volume 21, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-02-29
DOI
10.1186/s12864-020-6594-0
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Cost‐efficient high throughput capture of museum arthropod specimen DNA using PCR ‐generated baits
- (2019) Alexander Knyshov et al. Methods in Ecology and Evolution
- An efficient and safe method for the extraction of total DNA from shed frog skin
- (2019) Yuan Xu et al. Conservation Genetics Resources
- Historical DNA as a tool to address key questions in avian biology and evolution: A review of methods, challenges, applications, and future directions
- (2019) Shawn M. Billerman et al. Molecular Ecology Resources
- Ancient Genomes Reveal Yamnaya-Related Ancestry and a Potential Source of Indo-European Speakers in Iron Age Tianshan
- (2019) Chao Ning et al. CURRENT BIOLOGY
- Museum specimens provide reliable SNP data for population genomic analysis of a widely distributed but threatened cockatoo species
- (2019) Kyle M. Ewart et al. Molecular Ecology Resources
- Sequence capture phylogenomics of historical ethanol‐preserved museum specimens: Unlocking the rest of the vault
- (2019) Shahan Derkarabetian et al. Molecular Ecology Resources
- Repair of DNA damage caused by cytosine deamination in mitochondrial DNA of forensic case samples
- (2018) Erin M. Gorden et al. Forensic Science International-Genetics
- Genome Sequencing of Museum Specimens Reveals Rapid Changes in the Genetic Composition of Honey Bees in California
- (2018) Julie M Cridland et al. Genome Biology and Evolution
- Next-generation museum genomics: Phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea)
- (2018) Hannah M. Wood et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Extending the spectrum of DNA sequences retrieved from ancient bones and teeth
- (2017) Isabelle Glocke et al. GENOME RESEARCH
- Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens
- (2017) Sara Ruane et al. Molecular Ecology Resources
- Sequencing historical specimens: successful preparation of small specimens with low amounts of degraded DNA
- (2017) John S. Sproul et al. Molecular Ecology Resources
- Harnessing ancient genomes to study the history of human adaptation
- (2017) Stephanie Marciniak et al. NATURE REVIEWS GENETICS
- A new model for ancient DNA decay based on paleogenomic meta-analysis
- (2017) Logan Kistler et al. NUCLEIC ACIDS RESEARCH
- Neandertal and Denisovan DNA from Pleistocene sediments
- (2017) Viviane Slon et al. SCIENCE
- DNA degrades during storage in formalin-fixed and paraffin-embedded tissue blocks
- (2017) Alice Guyard et al. VIRCHOWS ARCHIV
- High-throughput SNP genotyping of historical and modern samples of five bird species via sequence capture of ultraconserved elements
- (2016) Haw Chuan Lim et al. Molecular Ecology Resources
- High phylogenetic utility of an ultraconserved element probe set designed for Arachnida
- (2016) James Starrett et al. Molecular Ecology Resources
- Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens
- (2016) Clemens L. Weiß et al. Royal Society Open Science
- Capturing protein-coding genes across highly divergent species
- (2016) Chenhong Li et al. BIOTECHNIQUES
- Library construction for next-generation sequencing: Overviews and challenges
- (2016) Steven R. Head et al. BIOTECHNIQUES
- Library construction for ancient genomics: Single strand or double strand?
- (2016) E. Andrew Bennett et al. BIOTECHNIQUES
- The use of museum samples for large-scale sequence capture: a study of congeneric horseshoe bats (family Rhinolophidae)
- (2015) Sebastian E. Bailey et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Robustness of Next Generation Sequencing on Older Formalin-Fixed Paraffin-Embedded Tissue
- (2015) Danielle Mercatante Carrick et al. PLoS One
- The future of ancient DNA: Technical advances and conceptual shifts
- (2014) Michael Hofreiter et al. BIOESSAYS
- ngsCAT: a tool to assess the efficiency of targeted enrichment sequencing
- (2014) Francisco J. López-Domingo et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Ancient DNA: the first three decades
- (2014) E. Hagelberg et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Partial uracil-DNA-glycosylase treatment for screening of ancient DNA
- (2014) N. Rohland et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
- (2013) Hákon Jónsson et al. BIOINFORMATICS
- Comparative Population Genomics of the Ejaculate in Humans and the Great Apes
- (2013) Jeffrey M. Good et al. MOLECULAR BIOLOGY AND EVOLUTION
- Unlocking the vault: next-generation museum population genomics
- (2013) Ke Bi et al. MOLECULAR ECOLOGY
- Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA
- (2012) Susanna Sawyer et al. PLoS One
- Exome-wide DNA capture and next generation sequencing in domestic and wild species
- (2011) Ted Cosart et al. BMC GENOMICS
- Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens
- (2011) V. C. Mason et al. GENOME RESEARCH
- The impact of next-generation sequencing on genomics
- (2011) Jun Zhang et al. Journal of Genetics and Genomics
- A draft genome of Yersinia pestis from victims of the Black Death
- (2011) Kirsten I. Bos et al. NATURE
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
- (2011) Sheila Fisher et al. GENOME BIOLOGY
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
- (2010) H. A. Burbano et al. SCIENCE
- Active DNA Demethylation Mediated by DNA Glycosylases
- (2009) Jian-Kang Zhu Annual Review of Genetics
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Forensic implications of genetic analyses from degraded DNA—A review
- (2009) Reza Alaeddini et al. Forensic Science International-Genetics
- Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA
- (2009) Adrian W. Briggs et al. NUCLEIC ACIDS RESEARCH
- Genetic analyses of historic and modern marbled murrelets suggest decoupling of migration and gene flow after habitat fragmentation
- (2009) M. Z. Peery et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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