Identification and characterization of microRNAs in Humulus lupulus using high-throughput sequencing and their response to Citrus bark cracking viroid (CBCVd) infection

Discovering MicroRNAs and Their Targets in Plants

(2015) Ajay Kumar Mishra et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Inositol transport proteins

(2015) Sabine Schneider   FEBS LETTERS

Identification and characterisation of tobacco microRNA transcriptome using high-throughput sequencing

(2015) J. Gao et al.   PLANT BIOLOGY

Crucial roles of the pentatricopeptide repeat protein SOAR1 in Arabidopsis response to drought, salt and cold stresses

(2015) Shang-Chuan Jiang et al.   PLANT MOLECULAR BIOLOGY

Deep-sequencing revealedCitrus bark cracking viroid(CBCVd) as a highly aggressive pathogen on hop

(2015) J. Jakse et al.   PLANT PATHOLOGY

Differential mRNA Accumulation upon Early Arabidopsis thaliana Infection with ORMV and TMV-Cg Is Associated with Distinct Endogenous Small RNAs Level

(2015) Diego Zavallo et al.   PLoS One

miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data

(2014) Jikai Lei et al.   BIOINFORMATICS

Identification and characterization of miRNAome in root, stem, leaf and tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing

(2014) Nisha Lakhotia et al.   BMC PLANT BIOLOGY

microRNA biogenesis, degradation and activity in plants

(2014) Meng Xie et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

miRNAs in the crosstalk between phytohormone signalling pathways

(2014) J. Curaba et al.   JOURNAL OF EXPERIMENTAL BOTANY

Specific Argonautes Selectively Bind Small RNAs Derived from Potato Spindle Tuber Viroid and Attenuate Viroid Accumulation In Vivo

(2014) S. Minoia et al.   JOURNAL OF VIROLOGY

The Draft Genome of Hop (Humulus lupulus), an Essence for Brewing

(2014) S. Natsume et al.   PLANT AND CELL PHYSIOLOGY

Identification of the Conserved and Novel miRNAs in Mulberry by High-Throughput Sequencing

(2014) Ling Jia et al.   PLoS One

APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs

(2013) Francesco Licausi et al.   NEW PHYTOLOGIST

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing

(2012) Md Shamimuzzaman et al.   BMC GENOMICS

Combinatorial analysis of lupulin gland transcription factors from R2R3Myb, bHLH and WDR families indicates a complex regulation of chs_H1 genes essential for prenylflavonoid biosynthesis in hop (Humulus Lupulus L.)

(2012) Jaroslav Matoušek et al.   BMC PLANT BIOLOGY

Identification and Characterization of MicroRNAs from Barley (Hordeum vulgare L.) by High-Throughput Sequencing

(2012) Shuzuo Lv et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

High-throughput sequencing discovery of conserved and novel microRNAs in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

(2012) Fengde Wang et al.   MOLECULAR GENETICS AND GENOMICS

The Promiscuous Life of Plant NUCLEAR FACTOR Y Transcription Factors

(2012) K. Petroni et al.   PLANT CELL

Gibberellin Regulates the Arabidopsis Floral Transition through miR156-Targeted SQUAMOSA PROMOTER BINDING-LIKE Transcription Factors

(2012) S. Yu et al.   PLANT CELL

Viroid-specific small RNA in plant disease

(2012) Christian Hammann et al.   RNA Biology

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis

(2011) Meng Zhao et al.   NEW PHYTOLOGIST

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Identification and Characterization of microRNAs from Peanut (Arachis hypogaea L.) by High-Throughput Sequencing

(2011) Xiaoyuan Chi et al.   PLoS One

Accumulation of Potato spindle tuber viroid-specific small RNAs is accompanied by specific changes in gene expression in two tomato cultivars

(2011) Ying Wang et al.   VIROLOGY

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Characterization of plant miRNAs and small RNAs derived from potato spindle tuber viroid (PSTVd) in infected tomato

(2010) Natalie Diermann et al.   BIOLOGICAL CHEMISTRY

Identification of the Switch in Early-to-Late Endosome Transition

(2010) Dmitry Poteryaev et al.   CELL

Regulation of barley miRNAs upon dehydration stress correlated with target gene expression

(2010) Melda Kantar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

High-throughput sequencing ofHop stunt viroid-derived small RNAs from cucumber leaves and phloem

(2010) GERMAN MARTINEZ et al.   MOLECULAR PLANT PATHOLOGY

MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity

(2010) Oswaldo Valdés-López et al.   NEW PHYTOLOGIST

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

(2010) H.-M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159

(2009) Nicolás G Bologna et al.   EMBO JOURNAL

Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis

(2009) Dov Moldovan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Hop (Humulus lupulus)-Derived Bitter Acids as Multipotent Bioactive Compounds

(2009) Marjan Van Cleemput et al.   JOURNAL OF NATURAL PRODUCTS

AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcriptaccDRNA editing and early chloroplast biogenesis inArabidopsis thaliana

(2009) Qing-Bo Yu et al.   PLANT JOURNAL

A Genome-Wide Characterization of MicroRNA Genes in Maize

(2009) Lifang Zhang et al.   PLoS Genetics

Differential expression of miRNAs in response to salt stress in maize roots

(2008) Dong Ding et al.   ANNALS OF BOTANY

The role of microRNAs and other endogenous small RNAs in plant stress responses

(2008) L SHUKLA et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The Arabidopsis homologs of CCR4-associated factor 1 show mRNA deadenylation activity and play a role in plant defence responses

(2008) Wenxing Liang et al.   CELL RESEARCH

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Roles of microRNA in plant defense and virus offense interaction

(2008) Yan-du Lu et al.   PLANT CELL REPORTS