The Draft Genome of Hop (Humulus lupulus), an Essence for Brewing

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Ultraviolet-B Radiation and Water Deficit Interact to Alter Flavonol and Anthocyanin Profiles in Grapevine Berries through Transcriptomic Regulation

(2014) Johann Martínez-Lüscher et al.   PLANT AND CELL PHYSIOLOGY

Differential Transcriptomic Analysis by RNA-Seq of GSNO-Responsive Genes Between Arabidopsis Roots and Leaves

(2014) Juan C. Begara-Morales et al.   PLANT AND CELL PHYSIOLOGY

High-Throughput Transcriptome Analysis of the Leafy Flower Transition of Catharanthus roseus Induced by Peanut Witches’-Broom Phytoplasma Infection

(2014) Li-Yu Daisy Liu et al.   PLANT AND CELL PHYSIOLOGY

Evolution and diversity of the 2-oxoglutarate-dependent dioxygenase superfamily in plants

(2014) Yosuke Kawai et al.   PLANT JOURNAL

The Flavonoid Biosynthetic Enzyme Chalcone Isomerase Modulates Terpenoid Production in Glandular Trichomes of Tomato

(2014) J.-H. Kang et al.   PLANT PHYSIOLOGY

Long-Term Oral Administration of Hop Flower Extracts Mitigates Alzheimer Phenotypes in Mice

(2014) Norio Sasaoka et al.   PLoS One

Genomic Signatures of Specialized Metabolism in Plants

(2014) L. Chae et al.   SCIENCE

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Transcriptome analysis of bitter acid biosynthesis and precursor pathways in hop (Humulus lupulus)

(2013) Shawn M Clark et al.   BMC PLANT BIOLOGY

Proanthocyanidin synthesis in Theobroma cacao: genes encoding anthocyanidin synthase, anthocyanidin reductase, and leucoanthocyanidin reductase

(2013) Yi Liu et al.   BMC PLANT BIOLOGY

Sequence Analysis of the Genome of Carnation (Dianthus caryophyllus L.)

(2013) M. Yagi et al.   DNA RESEARCH

Characterization of the Formation of Branched Short-Chain Fatty Acid:CoAs for Bitter Acid Biosynthesis in Hop Glandular Trichomes

(2013) Haiyang Xu et al.   Molecular Plant

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Glycyrrhiza uralensis Transcriptome Landscape and Study of Phytochemicals

(2013) Jordan A. Ramilowski et al.   PLANT AND CELL PHYSIOLOGY

Analysis of the Alfalfa Root Transcriptome in Response to Salinity Stress

(2013) Olga A. Postnikova et al.   PLANT AND CELL PHYSIOLOGY

Transcriptome Analysis of Japanese Pear (Pyrus pyrifolia Nakai) Flower Buds Transitioning Through Endodormancy

(2013) Songling Bai et al.   PLANT AND CELL PHYSIOLOGY

The High Polyphenol Content of Grapevine Cultivar Tannat Berries Is Conferred Primarily by Genes That Are Not Shared with the Reference Genome

(2013) C. Da Silva et al.   PLANT CELL

Coval: Improving Alignment Quality and Variant Calling Accuracy for Next-Generation Sequencing Data

(2013) Shunichi Kosugi et al.   PLoS One

Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions

(2012) Atsushi J. Nagano et al.   CELL

Relationship between the Sensory-Determined Astringency and the Flavanolic Composition of Red Wines

(2012) Natalia Quijada-Morín et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

HlPT-1, a membrane-bound prenyltransferase responsible for the biosynthesis of bitter acids in hops

(2011) Yusuke Tsurumaru et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The draft genome and transcriptome of Cannabis sativa

(2011) Harm van Bakel et al.   GENOME BIOLOGY

Assessment of the genetic diversity of wild hops (Humulus lupulus L.) in Europe using chemical and molecular analyses

(2010) Josef Patzak et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Evaluation of genetic variability of wild hops (Humulus lupulus L.) in Canada and the Caucasus region by chemical and molecular methods

(2010) Josef Patzak et al.   GENOME

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

(2010) A. J. Alverson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional Differentiation of the Glycosyltransferases That Contribute to the Chemical Diversity of Bioactive Flavonol Glycosides in Grapevines (Vitis vinifera)

(2010) E. Ono et al.   PLANT CELL

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genetic relationships in the genus Gentiana based on chloroplast DNA sequence data and nuclear DNA content

(2009) Kei-ichiro Mishiba et al.   BREEDING SCIENCE

Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid

(2009) Y. Nakao et al.   DNA RESEARCH

Hop proanthocyanidins induce apoptosis, protein carbonylation, and cytoskeleton disorganization in human colorectal adenocarcinoma cells via reactive oxygen species

(2009) Woon-Gye Chung et al.   FOOD AND CHEMICAL TOXICOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Heterodimeric geranyl(geranyl)diphosphate synthase from hop (Humulus lupulus) and the evolution of monoterpene biosynthesis

(2009) G. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

EST Analysis of Hop Glandular Trichomes Identifies an O-Methyltransferase That Catalyzes the Biosynthesis of Xanthohumol

(2008) J. Nagel et al.   PLANT CELL

Terpene Biosynthesis in Glandular Trichomes of Hop

(2008) G. Wang et al.   PLANT PHYSIOLOGY