RNA-seq analysis of the Rhizobium tropici CIAT 899 transcriptome shows similarities in the activation patterns of symbiotic genes in the presence of apigenin and salt

Regulatory nodD1 and nodD2 genes of Rhizobium tropici strain CIAT 899 and their roles in the early stages of molecular signaling and host-legume nodulation

(2015) Pablo del Cerro et al.   BMC GENOMICS

Opening the “black box” of nodD3, nodD4 and nodD5 genes of Rhizobium tropici strain CIAT 899

(2015) Pablo del Cerro et al.   BMC GENOMICS

ExpR Coordinates the Expression of Symbiotically Important, Bundle-Forming Flp Pili with Quorum Sensing in Sinorhizobium meliloti

(2014) Hardik M. Zatakia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RNA-Seq analysis of the multipartite genome of Rhizobium etli CE3 shows different replicon contributions under heat and saline shock

(2014) Gamaliel López-Leal et al.   BMC GENOMICS

The Symbiotic Biofilm of Sinorhizobium fredii SMH12, Necessary for Successful Colonization and Symbiosis of Glycine max cv Osumi, Is Regulated by Quorum Sensing Systems and Inducing Flavonoids via NodD1

(2014) Francisco Pérez-Montaño et al.   PLoS One

Global Transcriptional Response to Heat Shock of the Legume Symbiont Mesorhizobium loti MAFF303099 Comprises Extensive Gene Downregulation

(2013) A. Alexandre et al.   DNA RESEARCH

The thuEFGKAB Operon of Rhizobia and Agrobacterium tumefaciens Codes for Transport of Trehalose, Maltitol, and Isomers of Sucrose and Their Assimilation through the Formation of Their 3-Keto Derivatives

(2013) O. Y. Ampomah et al.   JOURNAL OF BACTERIOLOGY

Speak, friend and enter: signalling systems that promote beneficial symbiotic associations in plants

(2013) Giles E. D. Oldroyd   NATURE REVIEWS MICROBIOLOGY

Removing technical variability in RNA-seq data using conditional quantile normalization

(2012) K. D. Hansen et al.   BIOSTATISTICS

Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.)

(2012) Ernesto Ormeño-Orrillo et al.   BMC GENOMICS

Proteomic profiling of Rhizobium tropici PRF 81: identification of conserved and specific responses to heat stress

(2012) Douglas Gomes et al.   BMC MICROBIOLOGY

High NaCl Concentrations Induce thenodGenes ofRhizobium tropiciCIAT899 in the Absence of Flavonoid Inducers

(2012) B. Guasch-Vidal et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Genetics of Symbiotic Nitrogen Fixation: Comparative Genomics of 14 Rhizobia Strains by Resolution of Protein Clusters

(2012) Michael Black et al.   Genes

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Different and new Nod factors produced byRhizobium tropiciCIAT899 following Na+stress

(2009) Jana Estévez et al.   FEMS MICROBIOLOGY LETTERS

Rhizobiumcommonnodgenes are required for biofilm formation

(2009) Nancy A. Fujishige et al.   MOLECULAR MICROBIOLOGY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH