Genome-wide studies reveal novel and distinct biological pathways regulated by SIN3 isoforms

SIN3 is critical for stress resistance and modulates adult lifespan

(2016) Valerie L. Barnes et al.   Aging-US

Active promoters give rise to false positive ‘Phantom Peaks’ in ChIP-seq experiments

(2015) Dhawal Jain et al.   NUCLEIC ACIDS RESEARCH

ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

(2014) Li Shen et al.   BMC GENOMICS

Histone target selection within chromatin: an exemplary case of teamwork

(2014) M.-E. Lalonde et al.   GENES & DEVELOPMENT

A Role for H3K4 Monomethylation in Gene Repression and Partitioning of Chromatin Readers

(2014) Jemmie Cheng et al.   MOLECULAR CELL

Whole-Genome Analysis of Muscle Founder Cells Implicates the Chromatin Regulator Sin3A in Muscle Identity

(2014) Krista C. Dobi et al.   Cell Reports

Sin3: Insight into its transcription regulatory functions

(2013) Rama Kadamb et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Regulation of nucleosome dynamics by histone modifications

(2013) Gabriel E Zentner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Sin3a acts through a multi-gene module to regulate invasion in Drosophila and human tumors

(2012) T K Das et al.   ONCOGENE

Measuring reproducibility of high-throughput experiments

(2011) Qunhua Li et al.   Annals of Applied Statistics

In the loop: long range chromatin interactions and gene regulation

(2011) A. Dean   Briefings in Functional Genomics

Chromatin-modifying Complex Component Nurf55/p55 Associates with Histones H3 and H4 and Polycomb Repressive Complex 2 Subunit Su(z)12 through Partially Overlapping Binding Sites

(2011) Agnieszka J. Nowak et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A cis-regulatory map of the Drosophila genome

(2011) Nicolas Nègre et al.   NATURE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Loss of the SIN3 transcriptional corepressor results in aberrant mitochondrial function

(2010) Valerie L Barnes et al.   BMC BIOCHEMISTRY

Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells

(2010) Guillaume J. Filion et al.   CELL

DrosophilaSIN3 Isoforms Interact with Distinct Proteins and Have Unique Biological Functions

(2010) Marla M. Spain et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Novel Mammalian Complex Containing Sin3B Mitigates Histone Acetylation and RNA Polymerase II Progression within Transcribed Loci

(2010) P. Jelinic et al.   MOLECULAR AND CELLULAR BIOLOGY

Sin3: Master scaffold and transcriptional corepressor

(2009) Adrienne Grzenda et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

CEAS: cis-regulatory element annotation system

(2009) Hyunjin Shin et al.   BIOINFORMATICS

Regulation of cell proliferation and wing development by Drosophila SIN3 and String

(2009) Aishwarya Swaminathan et al.   MECHANISMS OF DEVELOPMENT

Histone Chaperones ASF1 and NAP1 Differentially Modulate Removal of Active Histone Marks by LID-RPD3 Complexes during NOTCH Silencing

(2009) Yuri M. Moshkin et al.   MOLECULAR CELL

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Drosophila SIN3 is required at multiple stages of development

(2008) Vishal Sharma et al.   DEVELOPMENTAL DYNAMICS

Structural basis of histone H4 recognition by p55

(2008) J.-J. Song et al.   GENES & DEVELOPMENT

A Systematic Screen for Transcriptional Regulators of the Yeast Cell Cycle

(2008) M. A. White et al.   GENETICS

The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men

(2008) Xiang-Jiao Yang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Specific requirement of the chromatin modifier mSin3B in cell cycle exit and cellular differentiation

(2008) G. David et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY