Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation

Detecting cryptic species in sympatry and allopatry: analysis of hidden diversity inPolyommatus(Agrodiaetus) butterflies (Lepidoptera: Lycaenidae)

(2015) Vladimir A. Lukhtanov et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Inbreeding, low genetic diversity, and spatial genetic structure in the endemic Hawaiian lobeliads Clermontia fauriei and Cyanea pilosa ssp. longipedunculata

(2015) Heather Jennings et al.   CONSERVATION GENETICS

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences

(2014) Huateng Huang et al.   SYSTEMATIC BIOLOGY

Quantifying morphological and genetic variation of sympatric populations to guide conservation of endangered, micro-endemic springsnails

(2013) Cayla R. Morningstar et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Introgression and Phenotypic Assimilation in Zimmerius Flycatchers (Tyrannidae): Population Genetic and Phylogenetic Inferences from Genome-Wide SNPs

(2013) Frank E. Rheindt et al.   SYSTEMATIC BIOLOGY

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Genetic structure in three species of whiskered bats (genusMyotis) during swarming

(2012) Wiesław Bogdanowicz et al.   JOURNAL OF MAMMALOGY

Promiscuous mating in the harem-roosting fruit bat,Cynopterus sphinx

(2012) KRITIKA M. GARG et al.   MOLECULAR ECOLOGY

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Evolutionary relationships of the old world fruit bats (Chiroptera, Pteropodidae): Another star phylogeny?

(2011) Francisca C Almeida et al.   BMC EVOLUTIONARY BIOLOGY

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic islands of divergence in hybridizingHeliconiusbutterflies identified by large-scale targeted sequencing

(2011) Nicola J. Nadeau et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular genetic perspective of group-living in a polygynous fruit bat, Cynopterus sphinx

(2010) Balaji Chattopadhyay et al.   MAMMALIAN BIOLOGY

Historical male-mediated introgression in horseshoe bats revealed by multilocus DNA sequence data

(2010) XIUGUANG MAO et al.   MOLECULAR ECOLOGY

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Natural hybridization generates mammalian lineage with species characteristics

(2010) P. A. Larsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

TANDEM: integrating automated allele binning into genetics and genomics workflows

(2009) Michael Matschiner et al.   BIOINFORMATICS

Perspective: conservation genetics enters the genomics era

(2009) John C. Avise   CONSERVATION GENETICS

Detection of hybrids in nature: application to oaks (Quercus suber and Q. ilex)

(2009) C Burgarella et al.   HEREDITY

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources