variancePartition: interpreting drivers of variation in complex gene expression studies
出版年份 2016 全文链接
标题
variancePartition: interpreting drivers of variation in complex gene expression studies
作者
关键词
Transcriptome profiling, RNA-seq, Linear mixed model
出版物
BMC BIOINFORMATICS
Volume 17, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-11-25
DOI
10.1186/s12859-016-1323-z
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Genetic Variation, Not Cell Type of Origin, Underlies the Majority of Identifiable Regulatory Differences in iPSCs
- (2016) Courtney K. Burrows et al. PLoS Genetics
- Fitting Linear Mixed-Effects Models Usinglme4
- (2015) Douglas Bates et al. Journal of Statistical Software
- Ballgown bridges the gap between transcriptome assembly and expression analysis
- (2015) Alyssa C Frazee et al. NATURE BIOTECHNOLOGY
- The human transcriptome across tissues and individuals
- (2015) M. Mele et al. SCIENCE
- The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
- (2015) et al. SCIENCE
- mRIN for direct assessment of genome-wide and gene-specific mRNA integrity from large-scale RNA-sequencing data
- (2015) Huijuan Feng et al. Nature Communications
- Analysis of gene expression data using a linear mixed model/finite mixture model approach: application to regional differences in the human brain
- (2014) Daniah Trabzuni et al. BIOINFORMATICS
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- RNA-seq: impact of RNA degradation on transcript quantification
- (2014) Irene Gallego Romero et al. BMC BIOLOGY
- Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study
- (2014) Sheng Li et al. NATURE BIOTECHNOLOGY
- Detecting and correcting systematic variation in large-scale RNA sequencing data
- (2014) Sheng Li et al. NATURE BIOTECHNOLOGY
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
- (2014) NATURE BIOTECHNOLOGY
- Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms
- (2014) Rob Patro et al. NATURE BIOTECHNOLOGY
- Advantages and pitfalls in the application of mixed-model association methods
- (2014) Jian Yang et al. NATURE GENETICS
- Genetic variability in the regulation of gene expression in ten regions of the human brain
- (2014) Adaikalavan Ramasamy et al. NATURE NEUROSCIENCE
- Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes
- (2014) T. Raj et al. SCIENCE
- Common Genetic Variants Modulate Pathogen-Sensing Responses in Human Dendritic Cells
- (2014) M. N. Lee et al. SCIENCE
- Innate Immune Activity Conditions the Effect of Regulatory Variants upon Monocyte Gene Expression
- (2014) B. P. Fairfax et al. SCIENCE
- Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures
- (2014) Sarah A. Munro et al. Nature Communications
- Genetic Background Drives Transcriptional Variation in Human Induced Pluripotent Stem Cells
- (2014) Foad Rouhani et al. PLoS Genetics
- voom: precision weights unlock linear model analysis tools for RNA-seq read counts
- (2014) Charity W Law et al. GENOME BIOLOGY
- Efficient computation with a linear mixed model on large-scale data sets with applications to genetic studies
- (2013) Matti Pirinen et al. Annals of Applied Statistics
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Integrated Systems Approach Identifies Genetic Nodes and Networks in Late-Onset Alzheimer’s Disease
- (2013) Bin Zhang et al. CELL
- Transcriptome and genome sequencing uncovers functional variation in humans
- (2013) Tuuli Lappalainen et al. NATURE
- Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories
- (2013) Peter A C 't Hoen et al. NATURE BIOTECHNOLOGY
- Differential analysis of gene regulation at transcript resolution with RNA-seq
- (2012) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Genome-wide efficient mixed-model analysis for association studies
- (2012) Xiang Zhou et al. NATURE GENETICS
- GC-Content Normalization for RNA-Seq Data
- (2011) Davide Risso et al. BMC BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- FaST linear mixed models for genome-wide association studies
- (2011) Christoph Lippert et al. NATURE METHODS
- Repeatability for Gaussian and non-Gaussian data: a practical guide for biologists
- (2010) Shinichi Nakagawa et al. BIOLOGICAL REVIEWS
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Common SNPs explain a large proportion of the heritability for human height
- (2010) Jian Yang et al. NATURE GENETICS
- Variance component model to account for sample structure in genome-wide association studies
- (2010) Hyun Min Kang et al. NATURE GENETICS
- Correction for hidden confounders in the genetic analysis of gene expression
- (2010) J. Listgarten et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
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