Explaining the geographic spread of emerging epidemics: a framework for comparing viral phylogenies and environmental landscape data

Temporal and spatial analysis of the 2014–2015 Ebola virus outbreak in West Africa

(2015) Miles W. Carroll et al.   NATURE

Virus evolution and transmission in an ever more connected world

(2015) Oliver G. Pybus et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion

(2014) Daniel Magee et al.   ARCHIVES OF VIROLOGY

Rooting the Phylogenetic Tree of Middle East Respiratory Syndrome Coronavirus by Characterization of a Conspecific Virus from an African Bat

(2014) V. M. Corman et al.   JOURNAL OF VIROLOGY

The early spread and epidemic ignition of HIV-1 in human populations

(2014) N. R. Faria et al.   SCIENCE

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2

(2014) Philippe Lemey et al.   PLoS Pathogens

Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints

(2013) N. R. Faria et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Unifying the spatial epidemiology and molecular evolution of emerging epidemics

(2012) O. G. Pybus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

(2011) F. Bielejec et al.   BIOINFORMATICS

Phylogenetic and epidemic modeling of rapidly evolving infectious diseases

(2011) Denise Kühnert et al.   INFECTION GENETICS AND EVOLUTION

Reconstructing the History of Maize Streak Virus Strain A Dispersal To Reveal Diversification Hot Spots and Its Origin in Southern Africa

(2011) A. L. Monjane et al.   JOURNAL OF VIROLOGY

Toward a quantitative understanding of viral phylogeography

(2011) Nuno Rodrigues Faria et al.   Current Opinion in Virology

Endemic Dengue Associated with the Co-Circulation of Multiple Viral Lineages and Localized Density-Dependent Transmission

(2011) Jayna Raghwani et al.   PLoS Pathogens

Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time

(2010) P. Lemey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Inferring dispersal: a Bayesian approach to phylogeny-based island biogeography, with special reference to the Canary Islands

(2008) Isabel Sanmartín et al.   JOURNAL OF BIOGEOGRAPHY

A Likelihood Framework for Estimating Phylogeographic History on a Continuous Landscape

(2008) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY