Construction of dynamic probabilistic protein interaction networks for protein complex identification

Accounting for Experimental Noise Reveals That mRNA Levels, Amplified by Post-Transcriptional Processes, Largely Determine Steady-State Protein Levels in Yeast

(2015) Gábor Csárdi et al.   PLoS Genetics

Detecting Protein Complexes in Protein Interaction Networks Modeled as Gene Expression Biclusters

(2015) Eileen Marie Hanna et al.   PLoS One

Dynamic networks reveal key players in aging

(2014) Fazle E. Faisal et al.   BIOINFORMATICS

Identifying protein complexes based on density and modularity in protein-protein interaction network

(2013) Jun Ren et al.   BMC Systems Biology

Construction of Ontology Augmented Networks for Protein Complex Prediction

(2013) Yijia Zhang et al.   PLoS One

Detection of protein complexes using a protein ranking algorithm

(2013) Nazar Zaki et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Dynamic Protein-Protein Interaction Wiring of the Human Spliceosome

(2012) Anna Hegele et al.   MOLECULAR CELL

Detecting overlapping protein complexes in protein-protein interaction networks

(2012) Tamás Nepusz et al.   NATURE METHODS

Construction and application of dynamic protein interaction network based on time course gene expression data

(2012) Jianxin Wang et al.   PROTEOMICS

Computational approaches for detecting protein complexes from protein interaction networks: a survey

(2010) Xiaoli Li et al.   BMC GENOMICS

Toward the dynamic interactome: it's about time

(2010) T. M. Przytycka et al.   BRIEFINGS IN BIOINFORMATICS

Complex discovery from weighted PPI networks

(2009) Guimei Liu et al.   BIOINFORMATICS

A core-attachment based method to detect protein complexes in PPI networks

(2009) Min Wu et al.   BMC BIOINFORMATICS

Dynamic modularity in protein interaction networks predicts breast cancer outcome

(2009) Ian W Taylor et al.   NATURE BIOTECHNOLOGY

Protein complex identification by supervised graph local clustering

(2008) Y. Qi et al.   BIOINFORMATICS

Up-to-date catalogues of yeast protein complexes

(2008) Shuye Pu et al.   NUCLEIC ACIDS RESEARCH

Dynamic Proteomics of Individual Cancer Cells in Response to a Drug

(2008) A. A. Cohen et al.   SCIENCE