Aligning the unalignable: bacteriophage whole genome alignments

Genome alignment with graph data structures: a comparison

(2014) Birte Kehr et al.   BMC BIOINFORMATICS

Genomic comparison of 93 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity

(2014) Julianne H Grose et al.   BMC GENOMICS

Understanding the enormous diversity of bacteriophages: The tailed phages that infect the bacterial family Enterobacteriaceae

(2014) Julianne H. Grose et al.   VIROLOGY

GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations

(2013) Gordon Gremme et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Common Evolutionary Origin for Tailed-Bacteriophage Functional Modules and Bacterial Machineries

(2011) D. Veesler et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Multilocus PCR typing strategy for differentiation of Staphylococcus aureus siphoviruses reflecting their modular genome structure

(2010) Jana Kahánková et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative Genomic Analysis of 60 Mycobacteriophage Genomes: Genome Clustering, Gene Acquisition, and Gene Size

(2010) Graham F. Hatfull et al.   JOURNAL OF MOLECULAR BIOLOGY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Bacteriophage genomics

(2008) Graham F Hatfull   CURRENT OPINION IN MICROBIOLOGY

Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution

(2008) Graham F. Hatfull et al.   RESEARCH IN MICROBIOLOGY