Learning a hierarchical representation of the yeast transcriptomic machinery using an autoencoder model

Trans-species learning of cellular signaling systems with bimodal deep belief networks

(2015) Lujia Chen et al.   BIOINFORMATICS

From Data towards Knowledge: Revealing the Architecture of Signaling Systems by Unifying Knowledge Mining and Data Mining of Systematic Perturbation Data

(2014) Songjian Lu et al.   PLoS One

Mechanisms other than activation of the iron regulon account for the hyper-resistance to cobalt of a Saccharomyces cerevisiae strain obtained by evolutionary engineering

(2013) Ceren Alkim et al.   Metallomics

Merged consensus clustering to assess and improve class discovery with microarray data

(2010) T Ian Simpson et al.   BMC BIOINFORMATICS

Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity

(2009) Esti Yeger-Lotem et al.   NATURE GENETICS

Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks

(2009) S.-s. C. Huang et al.   Science Signaling

Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology

(2008) Karthik Devarajan   PLoS Computational Biology