T1000: a reduced gene set prioritized for toxicogenomic studies

The next generation blueprint of computational toxicology at the U.S. Environmental Protection Agency

(2019) Russell S Thomas et al.   TOXICOLOGICAL SCIENCES

EcoToxChip: A next-generation toxicogenomics tool for chemical prioritization and environmental management

(2019) Niladri Basu et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Accelerating the Pace of Chemical Risk Assessment

(2018) Robert J. Kavlock et al.   CHEMICAL RESEARCH IN TOXICOLOGY

A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics

(2018) Deepak Mav et al.   PLoS One

A Qualitative Modeling Approach for Whole Genome Prediction Using High-Throughput Toxicogenomics Data and Pathway-Based Validation

(2018) Saad Haider et al.   Frontiers in Pharmacology

Recommended approaches in the application of toxicogenomics to derive points of departure for chemical risk assessment

(2016) Reza Farmahin et al.   ARCHIVES OF TOXICOLOGY

The Comparative Toxicogenomics Database: update 2017

(2016) Allan Peter Davis et al.   NUCLEIC ACIDS RESEARCH

Analysis of the ToxCast Chemical-Assay Space Using the Comparative Toxicogenomics Database

(2015) Bingjie Hu et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Compound signature detection on LINCS L1000 big data

(2015) Chenglin Liu et al.   Molecular BioSystems

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species

(2015) Yi Wang et al.   NUCLEIC ACIDS RESEARCH

FutureTox II: In vitro Data and In Silico Models for Predictive Toxicology

(2015) Thomas B. Knudsen et al.   TOXICOLOGICAL SCIENCES

The Molecular Signatures Database Hallmark Gene Set Collection

(2015) Arthur Liberzon et al.   Cell Systems

DWFS: A Wrapper Feature Selection Tool Based on a Parallel Genetic Algorithm

(2015) Othman Soufan et al.   PLoS One

Mining Chemical Activity Status from High-Throughput Screening Assays

(2015) Othman Soufan et al.   PLoS One

The evolution of lncRNA repertoires and expression patterns in tetrapods

(2014) Anamaria Necsulea et al.   NATURE

Open TG-GATEs: a large-scale toxicogenomics database

(2014) Yoshinobu Igarashi et al.   NUCLEIC ACIDS RESEARCH

Gene expression patterns unveil a new level of molecular heterogeneity in colorectal cancer

(2013) Eva Budinska et al.   JOURNAL OF PATHOLOGY

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

Temporal Concordance Between Apical and Transcriptional Points of Departure for Chemical Risk Assessment

(2013) Russell S. Thomas et al.   TOXICOLOGICAL SCIENCES

Classification with correlated features: unreliability of feature ranking and solutions

(2011) Laura Toloşi et al.   BIOINFORMATICS

Vision & strategy: Predictive ecotoxicology in the 21st century

(2010) Daniel L. Villeneuve et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Adverse outcome pathways: A conceptual framework to support ecotoxicology research and risk assessment

(2010) Gerald T. Ankley et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Toxicity Testing in the 21st Century: A Vision and a Strategy

(2010) Daniel Krewski et al.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART B-CRITICAL REVIEWS

Learning from Imbalanced Data

(2009) Haibo He et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

Suppression of Insulin-Like Growth Factor Acid-Labile Subunit Expression—A Novel Mechanism for Deoxynivalenol-Induced Growth Retardation

(2009) Chidozie J. Amuzie et al.   TOXICOLOGICAL SCIENCES

Cytochrome P450 omega hydroxylase (CYP4) function in fatty acid metabolism and metabolic diseases

(2008) James P. Hardwick   BIOCHEMICAL PHARMACOLOGY

Evaluation of Random Forest and Adaboost tree-based ensemble classification and spectral band selection for ecotope mapping using airborne hyperspectral imagery

(2008) Jonathan Cheung-Wai Chan et al.   REMOTE SENSING OF ENVIRONMENT