Transcriptome analysis of the induction of somatic embryogenesis in Coffea canephora and the participation of ARF and Aux/IAA genes

Transcriptome analysis of Lilium Oriental × Trumpet hybrid roots reveals auxin-related genes and stress-related genes involved in picloram-induced somatic embryogenesis induction

(2018) Minmin Chen et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Differentially expressed genes during the transition from early to late development phases in somatic embryo of banana (Musa spp. AAB group, Silk subgroup) cv. Manzano

(2018) Adrián J. Enríquez-Valencia et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Dempster-Shafer Theory for the Prediction of Auxin-Response Elements (AuxREs) in Plant Genomes

(2018) Nesrine Sghaier et al.   Biomed Research International

Transcriptome analysis of callus from melon

(2018) Huijun Zhang et al.   GENE

Identification and Expression Profiling of the Auxin Response Factors in Dendrobium officinale under Abiotic Stresses

(2017) Zhehao Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A Critical View on ABC Transporters and Their Interacting Partners in Auxin Transport

(2017) Markus Geisler et al.   PLANT AND CELL PHYSIOLOGY

Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis

(2017) Barbara Wójcikowska et al.   PLANT CELL REPORTS

The Systems Biology of Auxin in Developing Embryos

(2017) Victoria Mironova et al.   TRENDS IN PLANT SCIENCE

Comparative Transcriptome Analysis of SE initial dedifferentiation in cotton of different SE capability

(2017) Aiping Cao et al.   Scientific Reports

Selection and Validation of Reference Genes for Accurate RT-qPCR Data Normalization in Coffea spp. under a Climate Changes Context of Interacting Elevated [CO2] and Temperature

(2017) Madlles Q. Martins et al.   Frontiers in Plant Science

Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts

(2017) Bing Cheng et al.   GigaScience

Genome-wide transcriptome profiling of Carica papaya L. embryogenic callus

(2017) Nur Diyana Jamaluddin et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Transcriptome Analysis of Leaves, Flowers and Fruits Perisperm of Coffea arabica L. Reveals the Differential Expression of Genes Involved in Raffinose Biosynthesis

(2017) Suzana Tiemi Ivamoto et al.   PLoS One

Transcriptional Responses to the Auxin Hormone

(2016) Dolf Weijers et al.   Annual Review of Plant Biology

De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

(2016) Xueping Shi et al.   BMC GENOMICS

Transcriptome profiling and digital gene expression by deep sequencing in early somatic embryogenesis of endangered medicinal Eleutherococcus senticosus Maxim.

(2016) Lei Tao et al.   GENE

Auxin response factors

(2016) John William Chandler   PLANT CELL AND ENVIRONMENT

De novo transcriptome analysis reveals insights into dynamic homeostasis regulation of somatic embryogenesis in upland cotton (G. hirsutum L.)

(2016) Wen-Han Cheng et al.   PLANT MOLECULAR BIOLOGY

Transcriptional profiling of epigenetic regulators in somatic embryos during temperature induced formation of an epigenetic memory in Norway spruce

(2016) Igor A. Yakovlev et al.   PLANTA

A Review of Auxin Response Factors (ARFs) in Plants

(2016) Si-Bei Li et al.   Frontiers in Plant Science

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

(2015) Henry Heberle et al.   BMC BIOINFORMATICS

Endogenous target mimics, microRNA167, and its targets ARF6 and ARF8 during somatic embryo development in Dimocarpus longan Lour.

(2015) Yuling Lin et al.   MOLECULAR BREEDING

Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits

(2015) Priscila Mary Yuyama et al.   MOLECULAR GENETICS AND GENOMICS

The microRNA167 controls somatic embryogenesis in Arabidopsis through regulating its target genes ARF6 and ARF8

(2015) Ying Hua Su et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Mitogen-activated protein kinase cascades in signaling plant growth and development

(2015) Juan Xu et al.   TRENDS IN PLANT SCIENCE

Genome-wide identification, isolation and expression analysis of auxin response factor (ARF) gene family in sweet orange (Citrus sinensis)

(2015) Si-Bei Li et al.   Frontiers in Plant Science

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

A bitter cup: climate change profile of global production of Arabica and Robusta coffee

(2014) Christian Bunn et al.   CLIMATIC CHANGE

Brassica napus seed endosperm — Metabolism and signaling in a dead end tissue

(2014) Christin Lorenz et al.   Journal of Proteomics

The coffee genome hub: a resource for coffee genomes

(2014) Alexis Dereeper et al.   NUCLEIC ACIDS RESEARCH

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Transcriptome analysis of Capsicum annuum varieties Mandarin and Blackcluster: Assembly, annotation and molecular marker discovery

(2013) Yul-Kyun Ahn et al.   GENE

Plant Callus: Mechanisms of Induction and Repression

(2013) M. Ikeuchi et al.   PLANT CELL

Development of coffee somatic and zygotic embryos to plants differs in the morphological, histochemical and hydration aspects

(2013) H. Etienne et al.   TREE PHYSIOLOGY

Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton

(2012) Xiyan Yang et al.   BMC PLANT BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A candidate auxin-responsive expression marker gene, EgIAA9, for somatic embryogenesis in oil palm (Elaeis guineensis Jacq.)

(2012) Siew-Eng Ooi et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Transcriptional profiling of genes involved in embryogenic, non-embryogenic calluses and somatic embryogenesis of Valencia sweet orange by SSH-based microarray

(2012) Xiao-Xia Ge et al.   PLANTA

NAC proteins: regulation and role in stress tolerance

(2012) Swati Puranik et al.   TRENDS IN PLANT SCIENCE

A cellular expression map of the Arabidopsis AUXIN RESPONSE FACTOR gene family

(2011) Eike H. Rademacher et al.   PLANT JOURNAL

Selection of Reference Genes for Normalizing Quantitative Real-Time PCR Gene Expression Data with Multiple Variables in Coffea spp.

(2011) Luis F. Goulao et al.   PLANT MOLECULAR BIOLOGY REPORTER

Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice

(2009) Mukesh Jain et al.   FEBS Journal

Comprehensive Transcriptome Analysis of Auxin Responses in Arabidopsis

(2008) Ivan A. Paponov et al.   Molecular Plant

BABY BOOM target genes provide diverse entry points into cell proliferation and cell growth pathways

(2008) Paul Passarinho et al.   PLANT MOLECULAR BIOLOGY