标题
Transcriptional landscape of repetitive elements in normal and cancer human cells
作者
关键词
Retrotransposon, Transposable element, Prostate cancer, LINE-1, L1, LTR, HERV, Repetitive element, RNA-seq, ChIP-seq
出版物
BMC GENOMICS
Volume 15, Issue 1, Pages -
出版商
Springer Nature
发表日期
2014-07-11
DOI
10.1186/1471-2164-15-583
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma
- (2013) Ruchi Shukla et al. CELL
- Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes
- (2013) Andrew B. Stergachis et al. CELL
- Small MAFgenes variants and chronic myeloid leukemia
- (2013) Angelica Martínez-Hernández et al. EUROPEAN JOURNAL OF HAEMATOLOGY
- Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles
- (2013) Prabhat K. Mandal et al. HUMAN MOLECULAR GENETICS
- Differential L1 regulation in pluripotent stem cells of humans and apes
- (2013) Maria C. N. Marchetto et al. NATURE
- DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
- (2013) Mingchao Xie et al. NATURE GENETICS
- (Some) Cellular Mechanisms Influencing the Transcription of Human Endogenous Retrovirus, HERV-Fc1
- (2013) Magdalena Janina Laska et al. PLoS One
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings
- (2012) Shancheng Ren et al. CELL RESEARCH
- Active human retrotransposons: variation and disease
- (2012) Dustin C Hancks et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver
- (2012) D. Canella et al. GENOME RESEARCH
- Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- (2012) H. Tilgner et al. GENOME RESEARCH
- Extensive somatic L1 retrotransposition in colorectal tumors
- (2012) S. Solyom et al. GENOME RESEARCH
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- Expression of HERV-Fc1, a Human Endogenous Retrovirus, Is Increased in Patients with Active Multiple Sclerosis
- (2012) M. J. Laska et al. JOURNAL OF VIROLOGY
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- A map of the cis-regulatory sequences in the mouse genome
- (2012) Yin Shen et al. NATURE
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
- (2012) Davis J. McCarthy et al. NUCLEIC ACIDS RESEARCH
- Transposable Elements in TDP-43-Mediated Neurodegenerative Disorders
- (2012) Wanhe Li et al. PLoS One
- Landscape of Somatic Retrotransposition in Human Cancers
- (2012) E. Lee et al. SCIENCE
- Somatic retrotransposition alters the genetic landscape of the human brain
- (2011) J. Kenneth Baillie et al. NATURE
- Dynamic interactions between transposable elements and their hosts
- (2011) Henry L. Levin et al. NATURE REVIEWS GENETICS
- Transcription by RNA polymerase III: more complex than we thought
- (2011) Robert J. White NATURE REVIEWS GENETICS
- ENCODE whole-genome data in the UCSC Genome Browser: update 2012
- (2011) K. R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
- (2011) A. P. Jason de Koning et al. PLoS Genetics
- Alu elements: know the SINEs
- (2011) Prescott Deininger GENOME BIOLOGY
- A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags
- (2010) Jianrong Wang et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells
- (2010) D. Canella et al. GENOME RESEARCH
- L1 retrotransposition in neurons is modulated by MeCP2
- (2010) Alysson R. Muotri et al. NATURE
- Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors
- (2010) Andrew J Oler et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells
- (2010) Zarmik Moqtaderi et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Close association of RNA polymerase II and many transcription factors with Pol III genes
- (2010) Debasish Raha et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Long-range function of an intergenic retrotransposon
- (2010) W. Pi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Estimating enrichment of repetitive elements from high-throughput sequence data
- (2010) Daniel S Day et al. GENOME BIOLOGY
- A scaling normalization method for differential expression analysis of RNA-seq data
- (2010) Mark D Robinson et al. GENOME BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Comparative analysis of Alu repeats in primate genomes
- (2009) G. E. Liu et al. GENOME RESEARCH
- The regulated retrotransposon transcriptome of mammalian cells
- (2009) Geoffrey J Faulkner et al. NATURE GENETICS
- The impact of retrotransposons on human genome evolution
- (2009) Richard Cordaux et al. NATURE REVIEWS GENETICS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Trex1 Prevents Cell-Intrinsic Initiation of Autoimmunity
- (2008) Daniel B. Stetson et al. CELL
- Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
- (2008) Xi Chen et al. CELL
- Evolution of the mammalian transcription factor binding repertoire via transposable elements
- (2008) G. Bourque et al. GENOME RESEARCH
- A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE
- (2008) Geoffrey J. Faulkner et al. GENOMICS
- Modeling ChIP Sequencing In Silico with Applications
- (2008) Zhengdong D. Zhang et al. PLoS Computational Biology
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started