Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants

Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

(2016) Stefano Campanaro et al.   Biotechnology for Biofuels

Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment

(2016) Irena Maus et al.   JOURNAL OF BIOTECHNOLOGY

EDGAR 2.0: an enhanced software platform for comparative gene content analyses

(2016) Jochen Blom et al.   NUCLEIC ACIDS RESEARCH

Temperature-dependent transformation of biogas-producing microbial communities points to the increased importance of hydrogenotrophic methanogenesis under thermophilic operation

(2015) Bernadett Pap et al.   BIORESOURCE TECHNOLOGY

Degradation efficiency of agricultural biogas plants – A full-scale study

(2015) Stephan Ruile et al.   BIORESOURCE TECHNOLOGY

New steady-state microbial community compositions and process performances in biogas reactors induced by temperature disturbances

(2015) Gang Luo et al.   Biotechnology for Biofuels

Semi-continuous anaerobic digestion for biogas production: influence of ammonium acetate supplement and structure of the microbial community

(2015) Haijia Su et al.   Biotechnology for Biofuels

Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions

(2015) Yvonne Stolze et al.   Biotechnology for Biofuels

Eubacteria and archaea communities in seven mesophile anaerobic digester plants in Germany

(2015) Christian Abendroth et al.   Biotechnology for Biofuels

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant

(2015) Irena Maus et al.   JOURNAL OF BIOTECHNOLOGY

Review on research achievements of biogas from anaerobic digestion

(2015) Chunlan Mao et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters

(2015) Inka Vanwonterghem et al.   Scientific Reports

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant

(2015) Andreas Bremges et al.   GigaScience

Process diagnosis using methanogenic Archaea in maize-fed, trace element depleted fermenters

(2014) Bernhard Munk et al.   ANAEROBE

Illuminating Microbial Dark Matter in Meromictic Sakinaw Lake

(2014) Esther A. Gies et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

COMPARING OF MESOPHILIC AND THERMOPHILIC ANAEROBIC FERMENTED SEWAGE SLUDGE BASED ON CHEMICAL AND BIOCHEMICAL TESTS

(2014) L Kardos   APPLIED ECOLOGY AND ENVIRONMENTAL RESEARCH

Isolation and differentiation of methanogenic Archaea from mesophilic corn-fed on-farm biogas plants with special emphasis on the genus Methanobacterium

(2014) R. Stantscheff et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial community composition and dynamics in high-temperature biogas reactors using industrial bioethanol waste as substrate

(2014) Immo Röske et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Taxator-tk: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods

(2014) J. Dröge et al.   BIOINFORMATICS

A mini review on renewable sources for biofuel

(2014) Dang P. Ho et al.   BIORESOURCE TECHNOLOGY

A metagenomic study of the microbial communities in four parallel biogas reactors

(2014) Linn Solli et al.   Biotechnology for Biofuels

Biogas production and methanogenic archaeal community in mesophilic and thermophilic anaerobic co-digestion processes

(2014) D. Yu et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Multiple approaches to characterize the microbial community in a thermophilic anaerobic digester running on swine manure: A case study

(2014) Nguyen Ngoc Tuan et al.   MICROBIOLOGICAL RESEARCH

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Diversity and variability of methanogens during the shift from mesophilic to thermohilic conditions while biogas production

(2014) A. Ziembińska-Buczyńska et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose

(2014) Rim Driss Limam et al.   MicrobiologyOpen

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction

(2014) Florent E Angly et al.   Microbiome

Agricultural biogas production in Germany - from practice to microbiology basics

(2014) Michael Lebuhn et al.   Energy Sustainability and Society

Microbial community structure and dynamics during anaerobic digestion of various agricultural waste materials

(2013) Ayrat M. Ziganshin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A pyrosequencing-based metagenomic study of methane-producing microbial community in solid-state biogas reactor

(2013) An Li et al.   Biotechnology for Biofuels

Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms

(2013) Felix G Eikmeyer et al.   Biotechnology for Biofuels

454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

(2013) Carina Sundberg et al.   FEMS MICROBIOLOGY ECOLOGY

Reconstruction of Ancestral 16S rRNA Reveals Mutation Bias in the Evolution of Optimal Growth Temperature in the Thermotogae Phylum

(2013) Anna G. Green et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Biogas Production from Protein-Rich Biomass: Fed-Batch Anaerobic Fermentation of Casein and of Pig Blood and Associated Changes in Microbial Community Composition

(2013) Etelka Kovács et al.   PLoS One

Drivers of microbial community composition in mesophilic and thermophilic temperature-phased anaerobic digestion pre-treatment reactors

(2013) Hasina M. Pervin et al.   WATER RESEARCH

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing

(2012) Roland Wirth et al.   Biotechnology for Biofuels

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing

(2012) Martha Zakrzewski et al.   JOURNAL OF BIOTECHNOLOGY

Monitoring bacterial community structure and variability in time scale in full-scale anaerobic digesters

(2012) Sang-Hoon Lee et al.   JOURNAL OF ENVIRONMENTAL MONITORING

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Ray Meta: scalable de novo metagenome assembly and profiling

(2012) Sébastien Boisvert et al.   GENOME BIOLOGY

Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups

(2011) Radhey S. Gupta et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Characteristic microbial community of a dry thermophilic methanogenic digester: its long-term stability and change with feeding

(2011) Yue-Qin Tang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications

(2011) Bryan P Tracy et al.   CURRENT OPINION IN BIOTECHNOLOGY

Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing

(2011) Antje Rademacher et al.   FEMS MICROBIOLOGY ECOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Defluviitoga tunisiensis gen. nov., sp. nov., a thermophilic bacterium isolated from a mesothermic and anaerobic whey digester

(2011) W. Ben Hania et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Metabolic footprinting of the anaerobic bacterium Fusobacterium varium using 1H NMR spectroscopy

(2011) Kelly L. Resmer et al.   Molecular BioSystems

Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing

(2011) Sebastian Jaenicke et al.   PLoS One

Release LTPs104 of the All-Species Living Tree

(2011) Raúl Munoz et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

(2010) Athanasios Lykidis et al.   ISME Journal

COMPANION ANIMALS SYMPOSIUM: Microbes and gastrointestinal health of dogs and cats1

(2010) J. S. Suchodolski   JOURNAL OF ANIMAL SCIENCE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogas production: current state and perspectives

(2009) Peter Weiland   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge

(2009) Delphine Rivière et al.   ISME Journal

The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis

(2009) F.H. Liu et al.   JOURNAL OF APPLIED MICROBIOLOGY

Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing

(2009) Magdalena Kröber et al.   JOURNAL OF BIOTECHNOLOGY

Spirochaetes as intestinal pathogens: Lessons from a Brachyspira genome

(2009) David J Hampson et al.   Gut Pathogens

Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea

(2008) Yuchen Liu et al.   Annals of the New York Academy of Sciences

Diversity of the resident microbiota in a thermophilic municipal biogas plant

(2008) Agnes Weiss et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

"Candidatus Cloacamonas Acidaminovorans": Genome Sequence Reconstruction Provides a First Glimpse of a New Bacterial Division

(2008) E. Pelletier et al.   JOURNAL OF BACTERIOLOGY

The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology

(2008) Andreas Schlüter et al.   JOURNAL OF BIOTECHNOLOGY

Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor

(2008) Lutz Krause et al.   JOURNAL OF BIOTECHNOLOGY