Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease

National Trends and Long-term Outcomes of Liver Transplant for Alcohol-Associated Liver Disease in the United States

(2019) Brian P. Lee et al.   JAMA Internal Medicine

Serum and Fecal Oxylipins in Patients with Alcohol-Related Liver Disease

(2019) Bei Gao et al.   DIGESTIVE DISEASES AND SCIENCES

Bacteriophage Resistance Alters Antibiotic-Mediated Intestinal Expansion of Enterococci

(2019) Anushila Chatterjee et al.   INFECTION AND IMMUNITY

Engineered bacteriophages for treatment of a patient with a disseminated drug-resistant Mycobacterium abscessus

(2019) Rebekah M. Dedrick et al.   NATURE MEDICINE

Intestinal fungal dysbiosis and systemic immune response to fungi in patients with alcoholic hepatitis

(2019) Sonja Lang et al.   HEPATOLOGY

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models

(2018) Thomas H Clarke et al.   BIOINFORMATICS

Dysregulation of serum bile acids and FGF19 in alcoholic hepatitis

(2018) Katharina Brandl et al.   JOURNAL OF HEPATOLOGY

Adapted Bacteriophages for Treating Urinary Tract Infections

(2018) Aleksandre Ujmajuridze et al.   Frontiers in Microbiology

CylA is a sequence-specific protease involved in toxin biosynthesis

(2018) Weixin Tang et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Phages and immunomodulation

(2017) Andrzej Górski et al.   Future Microbiology

RefSeq: an update on prokaryotic genome annotation and curation

(2017) Daniel H Haft et al.   NUCLEIC ACIDS RESEARCH

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Oral Phage Therapy of Acute Bacterial Diarrhea With Two Coliphage Preparations: A Randomized Trial in Children From Bangladesh

(2016) Shafiqul Alam Sarker et al.   EBioMedicine

Transcriptome analysis of bacteriophage communities in periodontal health and disease

(2015) Tasha M. Santiago-Rodriguez et al.   BMC GENOMICS

Supplementation of Saturated Long-Chain Fatty Acids Maintains Intestinal Eubiosis and Reduces Ethanol-induced Liver Injury in Mice

(2015) Peng Chen et al.   GASTROENTEROLOGY

Intestinal microbiota contributes to individual susceptibility to alcoholic liver disease

(2015) M Llopis et al.   GUT

Prednisolone or Pentoxifylline for Alcoholic Hepatitis

(2015) Mark R. Thursz et al.   NEW ENGLAND JOURNAL OF MEDICINE

The human gut virome: a multifaceted majority

(2015) Lesley A. Ogilvie et al.   Frontiers in Microbiology

Burden of Disease Associated with Alcohol Use Disorders in the United States

(2014) Jürgen Rehm et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Exploiting gut bacteriophages for human health

(2014) Marion Dalmasso et al.   TRENDS IN MICROBIOLOGY

The sequence of the enterococcal cytolysin imparts unusual lanthionine stereochemistry

(2013) Weixin Tang et al.   Nature Chemical Biology

Mouse model of chronic and binge ethanol feeding (the NIAAA model)

(2013) Adeline Bertola et al.   Nature Protocols

Structure, Function, and Biology of the Enterococcus faecalis Cytolysin

(2013) Daria Van Tyne et al.   Toxins

Development of Quantitative PCR Assays Targeting the 16S rRNA Genes of Enterococcus spp. and Their Application to the Identification of Enterococcus Species in Environmental Samples

(2012) Hodon Ryu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Management of alcoholic hepatitis

(2012) Philippe Mathurin et al.   JOURNAL OF HEPATOLOGY

Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the Global Burden of Disease Study 2010

(2012) Rafael Lozano et al.   LANCET

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Protection from liver fibrosis by a peroxisome proliferator-activated receptor   agonist

(2012) K. Iwaisako et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutation of the gastric hydrogen-potassium ATPase alpha subunit causes iron-deficiency anemia in mice

(2011) L. Krieg et al.   BLOOD

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Bacteriophage therapy for refractory Pseudomonas aeruginosa urinary tract infection

(2011) A. Khawaldeh et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A New Scoring System for Prognostic Stratification of Patients With Alcoholic Hepatitis

(2008) Marlene Dominguez et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY