Floral organs act as environmental filters and interact with pollinators to structure the yellow monkeyflower ( Mimulus guttatus ) floral microbiome

Linking the foraging behavior of three bee species to pollen dispersal and gene flow

(2019) Johanne Brunet et al.   PLoS One

Movers and shakers: Bumble bee foraging behavior shapes the dispersal of microbes among and within flowers

(2019) Avery L. Russell et al.   Ecosphere

Variation in range size and dispersal capabilities of microbial taxa

(2018) Mallory J. Choudoir et al.   ECOLOGY

Gut microbiota utilize immunoglobulin A for mucosal colonization

(2018) G. P. Donaldson et al.   SCIENCE

Nectar yeasts: a natural microcosm for ecology

(2018) Callie R. Chappell et al.   YEAST

Dynamic and Assembly of Epiphyte and Endophyte Lactic Acid Bacteria During the Life Cycle of Origanum vulgare L.

(2018) Erica Pontonio et al.   Frontiers in Microbiology

The Gills of Reef Fish Support a Distinct Microbiome Influenced by Host-Specific Factors

(2018) Zoe A. Pratte et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies

(2018) Jolinda Pollock et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Network Approach to Understanding Patterns of Coflowering in Diverse Communities

(2018) Gerardo Arceo-Gómez et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Insect exclusion limits variation in bacterial microbiomes of tomato flowers and fruit

(2018) Sarah M. Allard et al.   JOURNAL OF APPLIED MICROBIOLOGY

Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies

(2018) Connor R. Fitzpatrick et al.   Microbiome

Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations

(2018) Raphael Eisenhofer et al.   TRENDS IN MICROBIOLOGY

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Interhost dispersal alters microbiome assembly and can overwhelm host innate immunity in an experimental zebrafish model

(2017) Adam R. Burns et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adding landscape genetics and individual traits to the ecosystem function paradigm reveals the importance of species functional breadth

(2017) Antonio R. Castilla et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The diversity of floral temperature patterns, and their use by pollinators

(2017) Michael JM Harrap et al.   eLife

Dynamic microbiome evolution in social bees

(2017) Waldan K. Kwong et al.   Science Advances

Consequences of a nectar yeast for pollinator preference and performance

(2016) Robert N. Schaeffer et al.   FUNCTIONAL ECOLOGY

Inoculation order of nectar-borne yeasts opens a door for transient species and changes nectar rewarded to pollinators

(2016) Moritz Mittelbach et al.   Fungal Ecology

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Plant–flower visitor networks in a serpentine metacommunity: assessing traits associated with keystone plant species

(2015) Matthew H. Koski et al.   Arthropod-Plant Interactions

Species coexistence in simple microbial communities: unravelling the phenotypic landscape of co-occurringMetschnikowiaspecies in floral nectar

(2015) María I. Pozo et al.   ENVIRONMENTAL MICROBIOLOGY

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Quantifying the relative roles of selective and neutral processes in defining eukaryotic microbial communities

(2015) Peter Morrison-Whittle et al.   ISME Journal

Application of a Neutral Community Model To Assess Structuring of the Human Lung Microbiome

(2015) Arvind Venkataraman et al.   mBio

The microbial ecology of flowers: an emerging frontier in phyllosphere research

(2014) Kristin Aleklett et al.   Botany

Spatial and temporal distribution patterns of nectar-inhabiting yeasts: how different floral microenvironments arise in winter-blooming Helleborus foetidus

(2014) María I. Pozo et al.   Fungal Ecology

Nectar Yeasts in the Tall Larkspur Delphinium barbeyi (Ranunculaceae) and Effects on Components of Pollinator Foraging Behavior

(2014) Robert N. Schaeffer et al.   PLoS One

Is dispersal neutral?

(2014) Winsor H. Lowe et al.   TRENDS IN ECOLOGY & EVOLUTION

Niche and host-associated functional signatures of the root surface microbiome

(2014) Maya Ofek-Lalzar et al.   Nature Communications

Nickel accumulation in leaves, floral organs and rewards varies by serpentine soil affinity

(2014) George A. Meindl et al.   AoB Plants

Coflowering Community Context Influences Female Fitness and Alters the Adaptive Value of Flower Longevity in Mimulus guttatus

(2013) Gerardo Arceo-Gómez et al.   AMERICAN NATURALIST

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)

(2013) Andrea R Ottesen et al.   BMC MICROBIOLOGY

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Unexpected Diversity during Community Succession in the Apple Flower Microbiome

(2013) A. Shade et al.   mBio

Yeasts in nectar of an early-blooming herb: sought by bumble bees, detrimental to plant fecundity

(2012) Carlos M. Herrera et al.   ECOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Nectar bacteria, but not yeast, weaken a plant-pollinator mutualism

(2012) R. L. Vannette et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

betapart: an R package for the study of beta diversity

(2012) Andrés Baselga et al.   Methods in Ecology and Evolution

The Evolution of Mutualism in Gut Microbiota Via Host Epithelial Selection

(2012) Jonas Schluter et al.   PLOS BIOLOGY

Phylogenetic Diversity Theory Sheds Light on the Structure of Microbial Communities

(2012) James P. O'Dwyer et al.   PLoS Computational Biology

Why do so many petals have conical epidermal cells?

(2011) Heather M. Whitney et al.   ANNALS OF BOTANY

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Modelling the effect of size on the aerial dispersal of microorganisms

(2011) David M. Wilkinson et al.   JOURNAL OF BIOGEOGRAPHY

Flowers as Islands: Spatial Distribution of Nectar-Inhabiting Microfungi among Plants of Mimulus aurantiacus, a Hummingbird-Pollinated Shrub

(2011) Melinda Belisle et al.   MICROBIAL ECOLOGY

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Heterospecific pollen deposition: does diversity alter the consequences?

(2011) Gerardo Arceo-Gómez et al.   NEW PHYTOLOGIST

The major volatile organic compound emitted from Arabidopsis thaliana flowers, the sesquiterpene (E)-β-caryophyllene, is a defense against a bacterial pathogen

(2011) Mengsu Huang et al.   NEW PHYTOLOGIST

Composition of epiphytic bacterial communities differs on petals and leaves

(2011) R. R. Junker et al.   PLANT BIOLOGY

Phylogenetic relatedness predicts priority effects in nectar yeast communities

(2011) K. G. Peay et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Synthesizing traditional biogeography with microbial ecology: the importance of dormancy

(2010) Kenneth J. Locey   JOURNAL OF BIOGEOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Germination of spores of Bacillales and Clostridiales species: mechanisms and proteins involved

(2010) Daniel Paredes-Sabja et al.   TRENDS IN MICROBIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Partitioning the turnover and nestedness components of beta diversity

(2009) Andrés Baselga   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Inhospitable sweetness: nectar filtering of pollinator-borne inocula leads to impoverished, phylogenetically clustered yeast communities

(2009) C. M. Herrera et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Impact of Biochemistry vs. Population Membership on Floral Scent Profiles in Colour Polymorphic Hesperis matronalis

(2008) Cassie J. Majetic et al.   ANNALS OF BOTANY

INVISIBLE FLORAL LARCENIES: MICROBIAL COMMUNITIES DEGRADE FLORAL NECTAR OF BUMBLE BEE-POLLINATED PLANTS

(2008) Carlos M. Herrera et al.   ECOLOGY