Exploratory analysis of transposable elements expression in the C. elegans early embryo

A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity

(2018) Michelle Percharde et al.   CELL

Pathogenic tau-induced piRNA depletion promotes neuronal death through transposable element dysregulation in neurodegenerative tauopathies

(2018) Wenyan Sun et al.   NATURE NEUROSCIENCE

Tau Activates Transposable Elements in Alzheimer’s Disease

(2018) Caiwei Guo et al.   Cell Reports

A Possible Role for Long Interspersed Nuclear Elements-1 (LINE-1) in Huntington’s Disease Progression

(2018) Huiping Tan et al.   MEDICAL SCIENCE MONITOR

Nimble and Ready to Mingle: Transposon Outbursts of Early Development

(2018) Diego Rodriguez-Terrones et al.   TRENDS IN GENETICS

Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species

(2017) K.M. Laricchia et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

Retrotransposon activation contributes to neurodegeneration in a Drosophila TDP-43 model of ALS

(2017) Lisa Krug et al.   PLoS Genetics

Activation of Lineage Regulators and Transposable Elements across a Pluripotent Spectrum

(2017) Jamie A. Hackett et al.   Stem Cell Reports

The impact of transposable elements on mammalian development

(2016) Jose L. Garcia-Perez et al.   DEVELOPMENT

A Transcriptional Lineage of the Early C. elegans Embryo

(2016) Sophia C. Tintori et al.   DEVELOPMENTAL CELL

L1-associated genomic regions are deleted in somatic cells of the healthy human brain

(2016) Jennifer A Erwin et al.   NATURE NEUROSCIENCE

Dynamic Transcription of Distinct Classes of Endogenous Retroviral Elements Marks Specific Populations of Early Human Embryonic Cells

(2015) Jonathan Göke et al.   Cell Stem Cell

A Transparent Window into Biology: A Primer on Caenorhabditis elegans

(2015) Ann K. Corsi et al.   GENETICS

Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells

(2015) Edward J. Grow et al.   NATURE

Asymmetric Transcript Discovery by RNA-seq in C. elegans Blastomeres Identifies neg-1, a Gene Important for Anterior Morphogenesis

(2015) Erin Osborne Nishimura et al.   PLoS Genetics

A Transparent Window into Biology: A Primer on Caenorhabditis elegans

(2015) Ann K. Corsi et al.   GENETICS

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

L1 Retrotransposons and Somatic Mosaicism in the Brain

(2014) Sandra R. Richardson et al.   Annual Review of Genetics

Transposons, environmental changes, and heritable induced phenotypic variability

(2014) Lucia Piacentini et al.   CHROMOSOMA

Loss of transcriptional control over endogenous retroelements during reprogramming to pluripotency

(2014) Marc Friedli et al.   GENOME RESEARCH

Mobile DNA elements in the generation of diversity and complexity in the brain

(2014) Jennifer A. Erwin et al.   NATURE REVIEWS NEUROSCIENCE

The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity

(2014) Xinyi Lu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs

(2014) R. Johnson et al.   RNA

Insights from the worm: The C. elegans model for innate immunity

(2014) Maria A. Ermolaeva et al.   SEMINARS IN IMMUNOLOGY

Transposition-Driven Genomic Heterogeneity in the Drosophila Brain

(2013) P. N. Perrat et al.   SCIENCE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

(2012) Claudia Carrieri et al.   NATURE

The Caenorhabditis elegans epidermis as a model skin. II: differentiation and physiological roles

(2012) Andrew D. Chisholm et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Somatic retrotransposition alters the genetic landscape of the human brain

(2011) J. Kenneth Baillie et al.   NATURE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Genomic gems: SINE RNAs regulate mRNA production

(2010) Steven L Ponicsan et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Cell fate specification in theC. elegansembryo

(2010) Morris F. Maduro   DEVELOPMENTAL DYNAMICS

Transposable elements have rewired the core regulatory network of human embryonic stem cells

(2010) Galih Kunarso et al.   NATURE GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

L1 retrotransposition in human neural progenitor cells

(2009) Nicole G. Coufal et al.   NATURE

Transposable elements and the evolution of regulatory networks

(2008) Cédric Feschotte   NATURE REVIEWS GENETICS