ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony: Table 1.

EUCALYPT: efficient tree reconciliation enumerator

(2015) Beatrice Donati et al.   Algorithms for Molecular Biology

Improved gene tree error correction in the presence of horizontal gene transfer

(2015) Mukul S. Bansal et al.   BIOINFORMATICS

SylvX: a viewer for phylogenetic tree reconciliations

(2015) François Chevenet et al.   BIOINFORMATICS

A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality

(2015) Thu-Hien To et al.   BMC BIOINFORMATICS

Joint amalgamation of most parsimonious reconciled gene trees

(2014) Celine Scornavacca et al.   BIOINFORMATICS

The Inference of Gene Trees with Species Trees

(2014) Gergely J. Szöllősi et al.   SYSTEMATIC BIOLOGY

Reconciliation of Gene and Species Trees

(2014) L. Y. Rusin et al.   Biomed Research International

Bio++: Efficient Extensible Libraries and Tools for Computational Molecular Evolution

(2013) Laurent Guéguen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Support Measures to Estimate the Reliability of Evolutionary Events Predicted by Reconciliation Methods

(2013) Thi-Hau Nguyen et al.   PLoS One

Lateral Gene Transfer from the Dead

(2013) Gergely J. Szöllősi et al.   SYSTEMATIC BIOLOGY

Efficient Exploration of the Space of Reconciled Gene Trees

(2013) Gergely J. Szöllősi et al.   SYSTEMATIC BIOLOGY

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss

(2012) Mukul S. Bansal et al.   BIOINFORMATICS

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

(2012) Maureen Stolzer et al.   BIOINFORMATICS

REPRESENTING A SET OF RECONCILIATIONS IN A COMPACT WAY

(2012) CELINE SCORNAVACCA et al.   Journal of Bioinformatics and Computational Biology

Models, algorithms and programs for phylogeny reconciliation

(2011) J.-P. Doyon et al.   BRIEFINGS IN BIOINFORMATICS

Jane: a new tool for the cophylogeny reconstruction problem

(2010) Chris Conow et al.   Algorithms for Molecular Biology

Simultaneous Identification of Duplications and Lateral Gene Transfers

(2010) A Tofigh et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The Cophylogeny Reconstruction Problem Is NP-Complete

(2010) Y. Ovadia et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Rapid evolutionary innovation during an Archaean genetic expansion

(2010) Lawrence A. David et al.   NATURE