EUCALYPT: efficient tree reconciliation enumerator

Cophylogenetic relationships between Anicetus parasitoids (Hymenoptera: Encyrtidae) and their scale insect hosts (Hemiptera: Coccidae)

(2013) Jun Deng et al.   BMC EVOLUTIONARY BIOLOGY

PACo: A Novel Procrustes Application to Cophylogenetic Analysis

(2013) Juan Antonio Balbuena et al.   PLoS One

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss

(2012) Mukul S. Bansal et al.   BIOINFORMATICS

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

(2012) Maureen Stolzer et al.   BIOINFORMATICS

Models, algorithms and programs for phylogeny reconciliation

(2011) J.-P. Doyon et al.   BRIEFINGS IN BIOINFORMATICS

Wolbachia detection: an assessment of standard PCR Protocols

(2011) P. M. SIMÕES et al.   Molecular Ecology Resources

Jane: a new tool for the cophylogeny reconstruction problem

(2010) Chris Conow et al.   Algorithms for Molecular Biology

Simultaneous Identification of Duplications and Lateral Gene Transfers

(2010) A Tofigh et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Rapid evolutionary innovation during an Archaean genetic expansion

(2010) Lawrence A. David et al.   NATURE

On the Computational Complexity of the Reticulate Cophylogeny Reconstruction Problem

(2009) Ran Libeskind-Hadas et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: Prevalence of host shifts and importance of delimiting parasite species for inferring cospeciation

(2008) Guislaine Refrégier et al.   BMC EVOLUTIONARY BIOLOGY

Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence

(2008) C. Ramsden et al.   MOLECULAR BIOLOGY AND EVOLUTION