A zero-inflated Poisson model for insertion tolerance analysis of genes based on Tn-seq data

ARTIST: High-Resolution Genome-Wide Assessment of Fitness Using Transposon-Insertion Sequencing

(2014) Justin R. Pritchard et al.   PLoS Genetics

A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data

(2013) Michael A DeJesus et al.   BMC BIOINFORMATICS

Tryptophan Biosynthesis Protects Mycobacteria from CD4 T-Cell-Mediated Killing

(2013) Yanjia J. Zhang et al.   CELL

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms

(2013) Tim van Opijnen et al.   NATURE REVIEWS MICROBIOLOGY

High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model–based analyses of transposon-insertion sequencing data

(2013) Michael C. Chao et al.   NUCLEIC ACIDS RESEARCH

A Statistical Framework for Improving Genomic Annotations of Prokaryotic Essential Genes

(2013) Jingyuan Deng et al.   PLoS One

Combining Quantitative Genetic Footprinting and Trait Enrichment Analysis to Identify Fitness Determinants of a Bacterial Pathogen

(2013) Travis J. Wiles et al.   PLoS Genetics

ESSENTIALS: Software for Rapid Analysis of High Throughput Transposon Insertion Sequencing Data

(2012) Aldert Zomer et al.   PLoS One

Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis

(2012) Yanjia J. Zhang et al.   PLoS Pathogens

Insertion site preference of Mu, Tn5, and Tn7 transposons

(2012) Brian Green et al.   Mobile DNA

Molecular Evidence for Zoonotic Transmission of an Emergent, Highly Pathogenic Campylobacter jejuni Clone in the United States

(2011) O. Sahin et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The Extinction Dynamics of Bacterial Pseudogenes

(2010) Chih-Horng Kuo et al.   PLoS Genetics

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

(2009) G. C. Langridge et al.   GENOME RESEARCH

Emergence of a Tetracycline-Resistant Campylobacter jejuni Clone Associated with Outbreaks of Ovine Abortion in the United States

(2008) O. Sahin et al.   JOURNAL OF CLINICAL MICROBIOLOGY