Independent Evolution with the Gene Flux Originating from Multiple Xanthomonas Species Explains Genomic Heterogeneity in Xanthomonas perforans

Multiple Recombination Events Drive the Current Genetic Structure of Xanthomonas perforans in Florida

(2019) Sujan Timilsina et al.   Frontiers in Microbiology

The type III effector AvrBsT enhances Xanthomonas perforans fitness in field-grown tomato

(2018) Peter Abrahamian et al.   PHYTOPATHOLOGY

Population Dynamics of Xanthomonads Associated with Bacterial Spot of Tomato and Pepper during 27 Years across Taiwan

(2018) Rishi Ram Burlakoti et al.   PLANT DISEASE

Genomic Inference of Recombination-Mediated Evolution in Xanthomonas euvesicatoria and X. perforans

(2018) Mustafa O. Jibrin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Complete genome sequence reveals evolutionary dynamics of an emerging and variant pathovar of Xanthomonas euvesicatoria

(2018) Kanika Bansal et al.   Genome Biology and Evolution

Reclassification of Xanthomonas gardneri (ex Šutič 1957) Jones et al. 2006 as a later heterotypic synonym of Xanthomonas cynarae Trébaol et al. 2000 and description of X. cynarae pv. cynarae and X. cynarae pv. gardneri based on whole genome analyses

(2018) S. Timilsina et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Host range and phylogenetic analysis of Xanthomonas alfalfae causing bacterial leaf spot of alfalfa in Iran

(2017) Zohreh Yaripour et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations

(2017) Rafal Mostowy et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

TALE-induced bHLH transcription factors that activate a pectate lyase contribute to water soaking in bacterial spot of tomato

(2017) Allison R. Schwartz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using Ecology, Physiology, and Genomics to Understand Host Specificity inXanthomonas

(2016) Marie-Agnès Jacques et al.   Annual Review of Phytopathology

plasmidSPAdes: assembling plasmids from whole genome sequencing data

(2016) Dmitry Antipov et al.   BIOINFORMATICS

Occurrence and Characterization of the Bacterial Spot PathogenXanthomonas euvesicatoriaon Pepper in Iran

(2016) Ebrahim Osdaghi et al.   JOURNAL OF PHYTOPATHOLOGY

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Analysis of Sequenced Genomes ofXanthomonas perforansIdentifies Candidate Targets for Resistance Breeding in Tomato

(2016) Sujan Timilsina et al.   PHYTOPATHOLOGY

Widespread distribution ofXanthomonas perforansand limited presence ofX. gardneriin Brazil

(2016) E. R. Araújo et al.   PLANT PATHOLOGY

AnnoTALE: bioinformatics tools for identification, annotation and nomenclature of TALEs from Xanthomonas genomic sequences

(2016) Jan Grau et al.   Scientific Reports

Whole-Genome Sequences of Xanthomonas euvesicatoria Strains Clarify Taxonomy and Reveal a Stepwise Erosion of Type 3 Effectors

(2016) Jeri D. Barak et al.   Frontiers in Plant Science

Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts

(2015) Chao-Li Huang et al.   BMC GENOMICS

Occurrence of copper-resistant strains and a shift in Xanthomonas spp. causing tomato bacterial spot in Ontario

(2015) Pervaiz A. Abbasi et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Xanthomonas campestris pv. vesicatoria Secretes Proteases and Xylanases via the Xps Type II Secretion System and Outer Membrane Vesicles

(2015) Magali Solé et al.   JOURNAL OF BACTERIOLOGY

Bacterial spot of tomato and pepper: diverseXanthomonasspecies with a wide variety of virulence factors posing a worldwide challenge

(2015) Neha Potnis et al.   MOLECULAR PLANT PATHOLOGY

Genetic characterization of strains named asXanthomonas axonopodispv.dieffenbachiaeleads to a taxonomic revision of theX. axonopodisspecies complex

(2015) E. C. Constantin et al.   PLANT PATHOLOGY

Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity

(2015) Allison R. Schwartz et al.   Frontiers in Microbiology

Multilocus Sequence Analysis of Xanthomonads Causing Bacterial Spot of Tomato and Pepper Plants Reveals Strains Generated by Recombination among Species and Recent Global Spread of Xanthomonas gardneri

(2014) Sujan Timilsina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

(2014) David Coil et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Molecular characterization of Xanthomonas strains responsible for bacterial spot of tomato in Ethiopia

(2014) Misrak Kebede et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

(2013) L. Cheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Novel Xanthomonas sp. Causes Bacterial Spot of Rose (Rosa spp.)

(2013) Cheng-Hua Huang et al.   PLANT DISEASE

Evolutionary History of the Plant Pathogenic Bacterium Xanthomonas axonopodis

(2013) Nadia Mhedbi-Hajri et al.   PLoS One

Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases

(2012) Frank-Jörg Vorhölter et al.   BMC MICROBIOLOGY

Transgenic Resistance Confers Effective Field Level Control of Bacterial Spot Disease in Tomato

(2012) Diana M. Horvath et al.   PLoS One

MultiLocus Sequence Analysis- and Amplified Fragment Length Polymorphism-based characterization of xanthomonads associated with bacterial spot of tomato and pepper and their relatedness to Xanthomonas species

(2012) A.A. Hamza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

(2011) Neha Potnis et al.   BMC GENOMICS

Efficient de novo assembly of large genomes using compressed data structures

(2011) J. T. Simpson et al.   GENOME RESEARCH

XanthomonasAvrBs3 Family-Type III Effectors: Discovery and Function

(2010) Jens Boch et al.   Annual Review of Phytopathology

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Functional characterization of the Xcs and Xps type II secretion systems from the plant pathogenic bacterium Xanthomonas campestris pv vesicatoria

(2010) Robert Szczesny et al.   NEW PHYTOLOGIST

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Mutation in the xpsD gene of Xanthomonas axonopodis pv. citri affects cellulose degradation and virulence

(2009) Juliana Cristina Baptista et al.   GENETICS AND MOLECULAR BIOLOGY

Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences

(2009) N. Parkinson et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Characterization of AvrHah1, a novel AvrBs3-like effector fromXanthomonas gardneriwith virulence and avirulence activity

(2008) Sebastian Schornack et al.   NEW PHYTOLOGIST

New substrates for TonB-dependent transport: do we only see the ‘tip of the iceberg’?

(2008) Kristine Schauer et al.   TRENDS IN BIOCHEMICAL SCIENCES