Microbiome-driven identification of microbial indicators for postharvest diseases of sugar beets

Isolation, Diversity, and Antimicrobial and Immunomodulatory Activities of Endophytic Actinobacteria From Tea Cultivars Zijuan and Yunkang-10 (Camellia sinensis var. assamica)

(2018) Wei Wei et al.   Frontiers in Microbiology

Diversity of culturable methylotrophic bacteria in different genotypes of groundnut and their potential for plant growth promotion

(2018) R. Krishnamoorthy et al.   3 Biotech

Diversity of culturable methylotrophic bacteria in different genotypes of groundnut and their potential for plant growth promotion

(2018) R. Krishnamoorthy et al.   3 Biotech

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Effect of Environment and Sugar Beet Genotype on Root Rot Development and Pathogen Profile During Storage

(2016) Sebastian Liebe et al.   PHYTOPATHOLOGY

The science, development, and commercialization of postharvest biocontrol products

(2016) Samir Droby et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Development of a real-time PCR assay for Penicillium expansum quantification and patulin estimation in apples

(2015) Joanna Tannous et al.   FOOD MICROBIOLOGY

Sensitive and rapid RT-qPCR quantification of pathogenic Candida species in human blood

(2015) Kiyohito Ogata et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

(2015) Melanie Schirmer et al.   NUCLEIC ACIDS RESEARCH

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Potential Role of Flavobacterial Gliding-Motility and Type IX Secretion System Complex in Root Colonization and Plant Defense

(2014) Max Kolton et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Unraveling the plant microbiome: looking back and future perspectives

(2014) Gabriele Berg et al.   Frontiers in Microbiology

Progress in cultivation-independent phyllosphere microbiology

(2013) Thomas Müller et al.   FEMS MICROBIOLOGY ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Molecular characterization of root-associated fungal communities in relation to health status of Pisum sativum using barcoded pyrosequencing

(2012) L. Yu et al.   PLANT AND SOIL

In Planta Stage-Specific Fungal Gene Profiling Elucidates the Molecular Strategies of Fusarium graminearum Growing inside Wheat Coleoptiles

(2012) X.-W. Zhang et al.   PLANT CELL

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Strain-specific colonization pattern of Rhizoctonia antagonists in the root system of sugar beet

(2010) Christin Zachow et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Changes in the processing quality of sugar beet (Beta vulgarisL.) during long-term storage under controlled conditions

(2008) Christine Kenter et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY