Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics

Screening of natural Wolbachia infection in Aedes aegypti , Aedes taeniorhynchus and Culex quinquefasciatus from Guadeloupe (French West Indies)

(2018) D. Goindin et al.   ACTA TROPICA

Dual Insect specific virus infection limits Arbovirus replication in Aedes mosquito cells

(2018) Michaela J. Schultz et al.   VIROLOGY

Metagenomic Virome Analysis of Culex Mosquitoes from Kenya and China

(2018) Evans Atoni et al.   Viruses-Basel

Comparative Metagenomic Profiling of Viromes Associated with Four Common Mosquito Species in China

(2018) Han Xia et al.   VIROLOGICA SINICA

Aedes aegypti mosquitoes from Guadeloupe (French West Indies) are able to transmit yellow fever virus

(2018) Pei-Shi Yen et al.   PLoS One

Discovery and high prevalence of Phasi Charoen-like virus in field-captured Aedes aegypti in South China

(2018) Xiaomin Zhang et al.   VIROLOGY

Virome of > 12 thousand Culex mosquitoes from throughout California

(2018) Mohammadreza Sadeghi et al.   VIROLOGY

High-Resolution Metatranscriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia

(2017) Mang Shi et al.   JOURNAL OF VIROLOGY

Amino acid metabolic signaling influences Aedes aegypti midgut microbiome variability

(2017) Sarah M. Short et al.   PLoS Neglected Tropical Diseases

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

Mosquito Defense Strategies against Viral Infection

(2016) Gong Cheng et al.   TRENDS IN PARASITOLOGY

West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses

(2016) Joseph R. Fauver et al.   VIROLOGY

Phleboviruses and the Type I Interferon Response

(2016) Jennifer Wuerth et al.   Viruses-Basel

Differential Susceptibilities of Aedes aegypti and Aedes albopictus from the Americas to Zika Virus

(2016) Thais Chouin-Carneiro et al.   PLoS Neglected Tropical Diseases

MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data Sets

(2016) Vanessa Isabell Jurtz et al.   PLoS One

Sequence-independent characterization of viruses based on the pattern of viral small RNAs produced by the host

(2015) Eric Roberto Guimarães Rocha Aguiar et al.   NUCLEIC ACIDS RESEARCH

Malpighian tubules are important determinants of Pseudomonas transstadial transmission and longtime persistence in Anopheles stephensi

(2015) Ali Chavshin et al.   Parasites & Vectors

Evolutionary and phenotypic analysis of live virus isolates suggests arthropod origin of a pathogenic RNA virus family

(2015) Marco Marklewitz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insect-Specific Virus Discovery: Significance for the Arbovirus Community

(2015) Bethany Bolling et al.   Viruses-Basel

Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis

(2015) Nádia Conceição-Neto et al.   Scientific Reports

Utilization of an Eilat Virus-Based Chimera for Serological Detection of Chikungunya Infection

(2015) Jesse H. Erasmus et al.   PLoS Neglected Tropical Diseases

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

A Metagenomic Survey of Viral Abundance and Diversity in Mosquitoes from Hubei Province

(2015) Chenyan Shi et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Chikungunya outbreak in the Caribbean region, December 2013 to March 2014, and the significance for Europe

(2014) W Van Bortel et al.   Eurosurveillance

Composition of Anopheles coluzzii and Anopheles gambiae microbiota from larval to adult stages

(2014) Geoffrey Gimonneau et al.   INFECTION GENETICS AND EVOLUTION

Cyclic Avian Mass Mortality in the Northeastern United States Is Associated with a Novel Orthomyxovirus

(2014) Andrew B. Allison et al.   JOURNAL OF VIROLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Vector competence ofCulex pipiens quinquefasciatus(Diptera: Culicidae) for West Nile virus isolates from Florida

(2014) Stephanie L. Richards et al.   TROPICAL MEDICINE & INTERNATIONAL HEALTH

Mosquito-Borne Viruses and Suppressors of Invertebrate Antiviral RNA Silencing

(2014) Scott O'Neal et al.   Viruses-Basel

The Insect Microbiome Modulates Vector Competence for Arboviruses

(2014) Natapong Jupatanakul et al.   Viruses-Basel

Viruses and antiviral immunity in Drosophila

(2013) Jie Xu et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Dengue outbreaks: a constant risk for Reunion Island. Results from a seroprevalence study among blood donors

(2013) S. Larrieu et al.   TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Transmission dynamics of an insect-specific flavivirus in a naturally infected Culex pipiens laboratory colony and effects of co-infection on vector competence for West Nile virus

(2012) Bethany G. Bolling et al.   VIROLOGY

Reciprocal Tripartite Interactions between the Aedes aegypti Midgut Microbiota, Innate Immune System and Dengue Virus Influences Vector Competence

(2012) Jose Luis Ramirez et al.   PLoS Neglected Tropical Diseases

Cupriavidus taiwanensisBacteroids inMimosa pudicaIndeterminate Nodules Are Not Terminally Differentiated

(2011) Marta Marchetti et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

The bacteriophage WORiC is the active phage element in wRi of Drosophila simulans and represents a conserved class of WO phages

(2011) Jennifer A Biliske et al.   BMC MICROBIOLOGY

Complete Bacteriophage Transfer in a Bacterial Endosymbiont (Wolbachia) Determined by Targeted Genome Capture

(2011) Bethany N. Kent et al.   Genome Biology and Evolution

The Native Wolbachia Endosymbionts of Drosophila melanogaster and Culex quinquefasciatus Increase Host Resistance to West Nile Virus Infection

(2010) Robert L. Glaser et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Transmission of West Nile Virus by Culex quinquefasciatus Say Infected with Culex Flavivirus Izabal

(2010) Rebekah J. Kent et al.   PLoS Neglected Tropical Diseases

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS