标题
MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data Sets
作者
关键词
Bacteriophages, Genomic databases, Sequence databases, Viral genomics, Database searching, Metagenomics, DNA sequence analysis, Sequence similarity searching
出版物
PLoS One
Volume 11, Issue 9, Pages e0163111
出版商
Public Library of Science (PLoS)
发表日期
2016-09-30
DOI
10.1371/journal.pone.0163111
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut
- (2015) Josué L. Castro-Mejía et al. Microbiome
- A century of phage research: Bacteriophages and the shaping of modern biology
- (2014) Eric C. Keen BIOESSAYS
- Metavir 2: new tools for viral metagenome comparison and assembled virome analysis
- (2014) Simon Roux et al. BMC BIOINFORMATICS
- Benchmarking of Methods for Genomic Taxonomy
- (2014) M. V. Larsen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
- (2014) H Bjørn Nielsen et al. NATURE BIOTECHNOLOGY
- Bacteriophage therapy: a potential solution for the antibiotic resistance crisis
- (2014) Zhabiz Golkar et al. Journal of Infection in Developing Countries
- Bacteriophage therapy of venous leg ulcers in humans: results of a phase I safety trial
- (2014) D.D. Rhoads et al. Journal of Wound Care
- Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples
- (2013) H. Hasman et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome
- (2013) Sheetal R. Modi et al. NATURE
- Safety analysis of a Russian phage cocktail: From MetaGenomic analysis to oral application in healthy human subjects
- (2013) Shawna McCallin et al. VIROLOGY
- Expanding the Marine Virosphere Using Metagenomics
- (2013) Carolina Megumi Mizuno et al. PLoS Genetics
- CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes
- (2013) Quan Zhang et al. GENOME BIOLOGY
- CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome
- (2012) A. Stern et al. GENOME RESEARCH
- Orthologous Gene Clusters and Taxon Signature Genes for Viruses of Prokaryotes
- (2012) D. M. Kristensen et al. JOURNAL OF BACTERIOLOGY
- Metagenomic Analysis of Viruses from Bat Fecal Samples Reveals Many Novel Viruses in Insectivorous Bats in China
- (2012) Xingyi Ge et al. JOURNAL OF VIROLOGY
- Going viral: next-generation sequencing applied to phage populations in the human gut
- (2012) Alejandro Reyes et al. NATURE REVIEWS MICROBIOLOGY
- PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
- (2012) Sajia Akhter et al. NUCLEIC ACIDS RESEARCH
- Bacteriophages Carrying Antibiotic Resistance Genes in Fecal Waste from Cattle, Pigs, and Poultry
- (2011) Marta Colomer-Lluch et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- The human gut virome: Inter-individual variation and dynamic response to diet
- (2011) S. Minot et al. GENOME RESEARCH
- Taxonomic metagenome sequence assignment with structured output models
- (2011) Kaustubh R Patil et al. NATURE METHODS
- Antibiotic Resistance Genes in the Bacteriophage DNA Fraction of Environmental Samples
- (2011) Marta Colomer-Lluch et al. PLoS One
- Viruses in the faecal microbiota of monozygotic twins and their mothers
- (2010) Alejandro Reyes et al. NATURE
- Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity
- (2010) D. Willner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Selection of representative protein data sets
- (2010) Uwe Hobohm et al. PROTEIN SCIENCE
- Bacteriophages as potential new therapeutics to replace or supplement antibiotics
- (2010) Mzia Kutateladze et al. TRENDS IN BIOTECHNOLOGY
- A controlled clinical trial of a therapeutic bacteriophage preparation in chronic otitis due to antibiotic-resistantPseudomonas aeruginosa; a preliminary report of efficacy
- (2009) A. Wright et al. CLINICAL OTOLARYNGOLOGY
- Redefining viruses: lessons from Mimivirus
- (2008) Didier Raoult et al. NATURE REVIEWS MICROBIOLOGY
- Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools
- (2008) Rob Lavigne et al. RESEARCH IN MICROBIOLOGY
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started