Complete Genome Sequence of the Plant Growth-Promoting Bacterium Hartmannibacter diazotrophicus Strain E19T

Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains

(2018) Luis Acuña-Amador et al.   BMC GENOMICS

Genomic characterization of methylotrophy of Oharaeibacter diazotrophicus strain SM30 T

(2018) Haoxin Lv et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Oharaeibacter diazotrophicus gen. nov., sp. nov., a diazotrophic and facultatively methylotrophic bacterium, isolated from rice rhizosphere

(2017) Haoxin Lv et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

(2017) Meinhard Simon et al.   ISME Journal

Improving germination indices of alfalfa cultivars under saline stress by inoculation with benefi cial bacteria

(2017) M. Ansari et al.   SEED SCIENCE AND TECHNOLOGY

Abiotic Stress Responses and Microbe-Mediated Mitigation in Plants: The Omics Strategies

(2017) Kamlesh K. Meena et al.   Frontiers in Plant Science

Transcriptome profiling of genes involved in induced systemic salt tolerance conferred by Bacillus amyloliquefaciens FZB42 in Arabidopsis thaliana

(2017) Shaofang Liu et al.   Scientific Reports

Dealing with salinity extremes and nitrogen limitation - an unexpected strategy of the marine bacterium Dinoroseobacter shibae

(2016) Sarah Kleist et al.   ENVIRONMENTAL MICROBIOLOGY

Prediction of bacterial associations with plants using a supervised machine-learning approach

(2016) Pedro Manuel Martínez-García et al.   ENVIRONMENTAL MICROBIOLOGY

OrthoANI: An improved algorithm and software for calculating average nucleotide identity

(2016) Imchang Lee et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Whole genome analysis of halotolerant and alkalotolerant plant growth-promoting rhizobacterium Klebsiella sp. D5A

(2016) Wuxing Liu et al.   Scientific Reports

Plant growth-promoting effects of Hartmannibacter diazotrophicus on summer barley (Hordeum vulgare L.) under salt stress

(2015) Christian Suarez et al.   APPLIED SOIL ECOLOGY

Methylobrevis pamukkalensis gen. nov., sp. nov., a halotolerant restricted facultative methylotroph isolated from saline water

(2015) Maria N. Poroshina et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Paradox of plant growth promotion potential of rhizobacteria and their actual promotion effect on growth of barley (Hordeum vulgare L.) under salt stress

(2015) Massimiliano Cardinale et al.   MICROBIOLOGICAL RESEARCH

Past and future species definitions for Bacteria and Archaea

(2015) Ramon Rosselló-Móra et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy

(2015) Masaki Shintani et al.   Frontiers in Microbiology

Plant-growth-promoting rhizobacteria to improve crop growth in saline soils: a review

(2014) Diby Paul et al.   Agronomy for Sustainable Development

Heterologous expression of pyrroloquinoline quinone (pqq) gene cluster confers mineral phosphate solubilization ability to Herbaspirillum seropedicae Z67

(2014) Jitendra Wagh et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Hartmannibacter diazotrophicus gen. nov., sp. nov., a phosphate-solubilizing and nitrogen-fixing alphaproteobacterium isolated from the rhizosphere of a natural salt-meadow plant

(2014) C. Suarez et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

(2014) M. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Economics of salt-induced land degradation and restoration

(2014) M. Qadir et al.   NATURAL RESOURCES FORUM

New Insights into 1-Aminocyclopropane-1-Carboxylate (ACC) Deaminase Phylogeny, Evolution and Ecological Significance

(2014) Francisco X. Nascimento et al.   PLoS One

Whole Genome Sequencing and Analysis of Plant Growth Promoting Bacteria Isolated from the Rhizosphere of Plantation Crops Coconut, Cocoa and Arecanut

(2014) Alka Gupta et al.   PLoS One

Analysis of genes contributing to plant-beneficial functions in plant growth-promoting rhizobacteria and related Proteobacteria

(2014) Maxime Bruto et al.   Scientific Reports

Organophosphonates revealed: new insights into the microbial metabolism of ancient molecules

(2013) John W. McGrath et al.   NATURE REVIEWS MICROBIOLOGY

The Complete Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas sp. UW4

(2013) Jin Duan et al.   PLoS One

Increased Growth and Germination Success in Plants following Hydrogen Sulfide Administration

(2013) Frederick D. Dooley et al.   PLoS One

Rhs proteins from diverse bacteria mediate intercellular competition

(2013) S. Koskiniemi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

(2013) Nicola Segata et al.   Nature Communications

The genes and enzymes of phosphonate metabolism by bacteria, and their distribution in the marine environment

(2012) Juan F. Villarreal-Chiu   Frontiers in Microbiology

The Type VI Secretion System: A Multipurpose Delivery System with a Phage-Like Machinery

(2011) Angela R. Records   MOLECULAR PLANT-MICROBE INTERACTIONS

Intermediates in the transformation of phosphonates to phosphate by bacteria

(2011) Siddhesh S. Kamat et al.   NATURE

Impact of PGPR inoculation on growth and antioxidant status of wheat under saline conditions

(2011) Sudhir Kumar Upadhyay et al.   PLANT BIOLOGY

Metabolism and function of phenazines in bacteria: impacts on the behavior of bacteria in the environment and biotechnological processes

(2010) Leland S. Pierson et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Complete genome and comparative analysis of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5

(2010) Debarati Paul et al.   BMC GENOMICS

The complexity of the ‘simple’ two-component system KdpD/KdpE inEscherichia coli

(2010) Ralf Heermann et al.   FEMS MICROBIOLOGY LETTERS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Complete Genome Sequence of the Metabolically Versatile Plant Growth-Promoting Endophyte Variovorax paradoxus S110

(2010) J.-I. Han et al.   JOURNAL OF BACTERIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

EDGAR: A software framework for the comparative analysis of prokaryotic genomes

(2009) Jochen Blom et al.   BMC BIOINFORMATICS

Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology

(2009) Tsai-Tien Tseng et al.   BMC MICROBIOLOGY

Mineral phosphate solubilization by rhizosphere bacteria and scope for manipulation of the direct oxidation pathway involving glucose dehydrogenase

(2009) B. Sashidhar et al.   JOURNAL OF APPLIED MICROBIOLOGY

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

(2009) Stéphane Compant et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phytoremediation and rhizoremediation of organic soil contaminants: Potential and challenges

(2008) Karen E. Gerhardt et al.   PLANT SCIENCE