The Bacterial Symbionts of Closely Related Hydrothermal Vent Snails With Distinct Geochemical Habitats Show Broad Similarity in Chemoautotrophic Gene Content

Type IV secretion in Gram-negative and Gram-positive bacteria

(2018) Elisabeth Grohmann et al.   MOLECULAR MICROBIOLOGY

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level

(2018) Luis M Rodriguez-R et al.   NUCLEIC ACIDS RESEARCH

Uncultivated microbes in need of their own taxonomy

(2017) Konstantinos T Konstantinidis et al.   ISME Journal

Sulfide Consumption in Sulfurimonas denitrificans and Heterologous Expression of Its Three Sulfide-Quinone Reductase Homologs

(2016) Yuchen Han et al.   JOURNAL OF BACTERIOLOGY

Quantifying dispersal from hydrothermal vent fields in the western Pacific Ocean

(2016) Satoshi Mitarai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metatranscriptional Response of Chemoautotrophic Ifremeria nautilei Endosymbionts to Differing Sulfur Regimes

(2016) Sherry L. Seston et al.   Frontiers in Microbiology

HydDB: A web tool for hydrogenase classification and analysis

(2016) Dan Søndergaard et al.   Scientific Reports

[FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation

(2015) John W. Peters et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

The uptake and excretion of partially oxidized sulfur expands the repertoire of energy resources metabolized by hydrothermal vent symbioses

(2015) R. A. Beinart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The flagellum in bacterial pathogens: For motility and a whole lot more

(2015) Bonnie Chaban et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The globally widespread genus Sulfurimonas: versatile energy metabolisms and adaptations to redox clines

(2015) Yuchen Han et al.   Frontiers in Microbiology

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Physiological and Genomic Features of a Novel Sulfur-Oxidizing Gammaproteobacterium Belonging to a Previously Uncultivated Symbiotic Lineage Isolated from a Hydrothermal Vent

(2014) Takuro Nunoura et al.   PLoS One

Molecular taxonomy and naming of five cryptic species ofAlviniconchasnails (Gastropoda: Abyssochrysoidea) from hydrothermal vents

(2014) Shannon B. Johnson et al.   SYSTEMATICS AND BIODIVERSITY

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

(2014) Yu-Wei Wu et al.   Microbiome

Nitrate and periplasmic nitrate reductases

(2013) Courtney Sparacino-Watkins et al.   CHEMICAL SOCIETY REVIEWS

Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts

(2013) J G Sanders et al.   ISME Journal

Allying with armored snails: the complete genome of gammaproteobacterial endosymbiont

(2013) Satoshi Nakagawa et al.   ISME Journal

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer

(2012) Manuel Kleiner et al.   CURRENT OPINION IN MICROBIOLOGY

Organic Sulfur Metabolisms in Hydrothermal Environments

(2012) KARYN L. ROGERS et al.   Geobiology

Identification and characterization of a bacterial hydrosulphide ion channel

(2012) Bryan K. Czyzewski et al.   NATURE

The Lau Basin Float Experiment (LAUB-FLEX)

(2012) Kevin Speer et al.   OCEANOGRAPHY

Evidence for the role of endosymbionts in regional-scale habitat partitioning by hydrothermal vent symbioses

(2012) R. A. Beinart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Bacterial transport of sulfate, molybdate, and related oxyanions

(2011) Esther Aguilar-Barajas et al.   BIOMETALS

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

(2011) C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms and Evolution of Oxidative Sulfur Metabolism in Green Sulfur Bacteria

(2011) Lea H. Gregersen et al.   Frontiers in Microbiology

Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean

(2010) Michael Hügler et al.   Annual Review of Marine Science

Motility and Chemotaxis inCampylobacterandHelicobacter

(2010) Paphavee Lertsethtakarn et al.   Annual Review of Microbiology

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

The type IV pilin, PilA, is required for full virulence of Francisella tularensis subspecies tularensis

(2010) Anna-Lena Forslund et al.   BMC MICROBIOLOGY

The metabolic demands of endosymbiotic chemoautotrophic metabolism on host physiological capacities

(2010) J. J. Childress et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Biotic and abiotic factors affecting distributions of megafauna in diffuse flow on andesite and basalt along the Eastern Lau Spreading Center, Tonga

(2010) EL Podowski et al.   MARINE ECOLOGY PROGRESS SERIES

Distribution of diffuse flow megafauna in two sites on the Eastern Lau Spreading Center, Tonga

(2009) Elizabeth L. Podowski et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

No facilitator required for membrane transport of hydrogen sulfide

(2009) J. C. Mathai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic rates and thermal tolerances of chemoautotrophic symbioses from Lau Basin hydrothermal vents and their implications for species distributions

(2008) Michael S. Henry et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Symbiotic diversity in marine animals: the art of harnessing chemosynthesis

(2008) Nicole Dubilier et al.   NATURE REVIEWS MICROBIOLOGY